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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTGCGCGGGAGGATCCGTTCGCGCCCGGAGGACCGGGATCCGGCGCCCGTCGTCGTCGACGCCCATGTCGGGCCACCTCGATCGCTTCGCGCGGCCATgtgagttccgaggctcctcctaatcctcctcctctgaccatctcgcggattcgaggctgctcgctgctgggttcggaatccctgctcgatcggccgcaat...

Basic information

species Zea mays
transcript GRMZM2G073571_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G073571_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g04020.1 (Oryza sativa), 5'ss of exon 2
-----AGGTGCGCGGGAGGATCCGTTCGCGCCCGGAGGACCGGGATCCGGCGCCCGT-CGTC-GTCGACGCCCATGTCGGGCCACCTCGATCGCTTCGCGCGGCCATgtgagttccgaggctcctcctaatcctcctcctctgaccatctcgcggattcgaggctgctcgctgctgggttc--ggaatccctgctcgatcggccgcaat---
     ||||  | | |||||       |     ||||||   |||  | | ||  || |||| | ||||| |||||||||| || ||||||||| |||||||||||||||||||  |       |  | ||  | |||  |   |  | |   ||  |      |||||| |  |   |||  || |    || | | | ||  |  ||   
TCCGGAGGTTTGGGAGAGGA-------GGAGGAGGAGGAGGAGGAGGCTGTGCTTGTTCGTCCGACGACGTCCATGTCGGGGCATCTCGATCGCCTCGCGCGGCCATgtgagttgggga-----ttttgatttttctctccgttctgttttttggggttttttttgctcgatttttttttcctgggagatttgattgctggggggttatgag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71443843|gb|DR824893.1|DR824893
EST:     GTCGTCGTCGACGCCCATGTCGGGCCACCTCGATCGCTTCGCGCGGCCAT                         GTTTTGAAGGGTGCTCAAGTCACGATGAACGTAGAGACCATAAGTCAGACT
genomic: GTCGTCGTCGACGCCCATGTCGGGCCACCTCGATCGCTTCGCGCGGCCATgtgagttccg ... aacctttcagGTTTTGAAGGGTGCTCAAGTCACGATGAACGTAGAGACCATAAGTCAGACT
EST: gi|211351459|gb|FL306915.1|FL306915
EST:     GTCGTCGTCGACGCCCATGTCGGGCCACCTCGATCGCTTCGCGCGGCCAT                         GTTTTGAAGGGTGCTCAAGTCACGATGAACGTAGAGACCATAAGTCAGACT
genomic: GTCGTCGTCGACGCCCATGTCGGGCCACCTCGATCGCTTCGCGCGGCCATgtgagttccg ... aacctttcagGTTTTGAAGGGTGCTCAAGTCACGATGAACGTAGAGACCATAAGTCAGACT
EST: gi|3172014|gb|AJ006545.1|AJ006545
EST:     GTCGTCGTCGACGCCCATGTCGGCCCACCTCGATCGCTTCGCGCGGCCAT                         GTTTTGAAGGGTGCTCAAGTCATGATGAACGTAGAGACCATAAGTCAGATT
genomic: GTCGTCGTCGACGCCCATGTCGGGCCACCTCGATCGCTTCGCGCGGCCATgtgagttccg ... aacctttcagGTTTTGAAGGGTGCTCAAGTCACGATGAACGTAGAGACCATAAGTCAGACT