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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGAACAACAAATCAAAAGCTTGATCAGCTCGGTGCCTACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctacttctcaattcatgatgccatgtttttttttatattgtggttttacataatacatagcatcttccagcttcctgaagagtattactgaatagattgataacatcatacacacgaagttcatcttgaacatgcttattagtgttctgtttgcatctgatggtatggcatcatctttgatag

Basic information

species Zea mays
transcript GRMZM2G073535_T05
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G073535_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g41900.3 (Oryza sativa), 5'ss of exon 2
----TAAGAACAACAAATCAAAAGCTTGATCAGCTCGGTGCCTACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctacttctcaattcatg-atgccatgtttttttttatattgtggttttacataatacatagcatcttccagcttcctgaagagtattactgaatagattgataacatcatacacacgaagttcatcttgaacatgcttattagtgttctgtttgcatctgatggtatggcatcatctttgatag
     |||| |||| | | |||||||||||| |  ||||||| || ||   ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||| |        ||| |||||  |||| |  |  |   | | |       |||  |||||   |     |||||  ||   |||||   | |  || |||| ||||| ||                                                                               
ACATAAAGACCAACGAGT-AAAAGCTTGATCTGTCCGGTGCCAACCAA---TCAACAAACAAGTTTCATGTCTGATCTCGACGTTCAGCTTCCATCTGCCTTCGgtacg------cttcagttcatctatgctacctcctgaatga-acca-aactttgtataatt--tgatcacttcctcctgaatgaagcaaact-ttgtatagtttgatcac-------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78122596|gb|DV540980.1|DV540980
EST:     ACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG                         ATCCGTTTGCTGAGGCAAATGCTGAGGACTCTGGTGCTGGTCCTGGAACAA
genomic: ACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCTGAGGACTCTGGTGCTGGTCCTGGAACGA
EST: gi|89757709|gb|DY687197.1|DY687197
EST:     -CAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG                         ATCCGTTTGCTGAGGCAAATGCTGAGGACTCTGGTGCTGGTCCTGGAACGA
genomic: ACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCTGAGGACTCTGGTGCTGGTCCTGGAACGA
EST: gi|9732040|gb|BE510792.1|BE510792
EST:     ACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG                         ATCCGTTTGCTGAGGCAAATGCTGAGGACTCTGGTGCTGGTCCTGGAACGA
genomic: ACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCTGAGGACTCTGGTGCTGGTCCTGGAACGA
EST: gi|18172656|gb|BM348044.1|BM348044
EST:     ACAACCAAGTATCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG                         ATCCGTTTGCTGAGGCAAATGCTGAGGACTCTGGTGCTGGTCCTGGAACGA
genomic: ACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCTGAGGACTCTGGTGCTGGTCCTGGAACGA