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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgcatgacctcaatcaattggcaagcatgtactcttcgtctgaagttgcattacatttgtatatatctaatttcttatgcaaactcag

Basic information

species Zea mays
transcript GRMZM2G072865_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G072865_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g43350.1 (Oryza sativa), 5'ss of exon 2
GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgcatgacctcaatcaattggcaagcatgtactcttcgtctgaagttgcattacatttgtatata-tctaatttcttatgcaaactcag
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GTGGCTCTTATTTATGTTGTATTAATTGCTGTAGTTCTGCAGCGATTGCCAATAAGCTTTTCTCAGgtactgatgaatgcacttcattactt--caatcaactaatgaacatactcggttatatctttaatagatataatatagtttcttgtgtata-tcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32926057|gb|CF030869.1|CF030869
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32926564|gb|CF031376.1|CF031376
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32925893|gb|CF030705.1|CF030705
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32926389|gb|CF031201.1|CF031201
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32920740|gb|CF025552.1|CF025552
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32925408|gb|CF030220.1|CF030220
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32925354|gb|CF030166.1|CF030166
EST:     GCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: GCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32925076|gb|CF029888.1|CF029888
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32921801|gb|CF026613.1|CF026613
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32925574|gb|CF030386.1|CF030386
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32929777|gb|CF034589.1|CF034589
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32925209|gb|CF030021.1|CF030021
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32926924|gb|CF031736.1|CF031736
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32925914|gb|CF030726.1|CF030726
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGGGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32926579|gb|CF031391.1|CF031391
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32921452|gb|CF026264.1|CF026264
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32924865|gb|CF029677.1|CF029677
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|211013709|gb|FL252303.1|FL252303
EST:     TGTATTGATTGCGGTAGTTTTGCAGCGCCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
genomic: TGTATTGATTGCGGTAGTTTTGCAGCG-CCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32925973|gb|CF030785.1|CF030785
EST:     TTGTATTGATTGCGGTAGTTTTACAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32924793|gb|CF029605.1|CF029605
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32925993|gb|CF030805.1|CF030805
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32925153|gb|CF029965.1|CF029965
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32926414|gb|CF031226.1|CF031226
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32925765|gb|CF030577.1|CF030577
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCTGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32925463|gb|CF030275.1|CF030275
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32926327|gb|CF031139.1|CF031139
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32926844|gb|CF031656.1|CF031656
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32926278|gb|CF031090.1|CF031090
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32925296|gb|CF030108.1|CF030108
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32921284|gb|CF026096.1|CF026096
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAACA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32925438|gb|CF030250.1|CF030250
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32929308|gb|CF034120.1|CF034120
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32926859|gb|CF031671.1|CF031671
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32929127|gb|CF033939.1|CF033939
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32925831|gb|CF030643.1|CF030643
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA
EST: gi|32926839|gb|CF031651.1|CF031651
EST:     TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG                         CAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCAGCGGAGCA
genomic: TTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAGgtactgatgc ... gcaaactcagCAATCACCCGGTCAGTTGAGGAATAGGAAGAATTCTAATTCCGGCGGAGCA