Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAAGACGTACGAGGGCGTCCCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtcttcgtttgtattagggattttcctgattgatggctgatcttaccttgtgttcttgtctgatgatattctgttgttgtggtccgtag

Basic information

species Zea mays
transcript GRMZM2G072315_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G072315_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g54890.2 (Oryza sativa), 5'ss of exon 2
CCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAAGACGTACGAGGGCGTCCCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgt-gtcttcgtttgtattagggattttcctgattgatggctgatcttaccttgtgttcttgtctgatgatattctgttgttgt-ggtccgtag
|||||||||| |||||||| ||||| ||||| ||| ||||||||||||| |||||||||||||||| |||||||||| |||||||||| ||||| || |||||||| |  |||| ||||  |  |||||||  |   ||     | ||  | |         | |||| ||| | ||   ||| ||  |    ||||
CCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAGGCGTACGAGGGCGTGCCGCCGCCGTACGACAGGACCAAGCGCATGGTCATCCCCGACGCGCTCAAgtacgtcggattcgcttgttgtttggatttttttttgtg-----taattgtgcgcgagcgagtagtctaatggtgtttgtttggtgccgaattgtag

upper sequence: GRMZM2G072315_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g54860.1 (Oryza sativa), 5'ss of exon 2
CCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAAGACGTACGAGGGCGTCCCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgt-gtcttcgtttgtattagggattttcctgattgatggctgatcttaccttgtgtt-----cttgtctgatgatattctgttgttgt-ggtccgtag
|||||||||| |||||||| ||||| ||||| ||| ||||||||| |||  ||||||||||||||| |||||||||| |||||||||| ||||| || |||||||| |  |||| ||||  |  |||| ||     ||  ||  |  | | |   ||          | |||| ||| | ||   ||| ||  |    ||||
CCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAGGCGTACGAGGTCGTGACGCCGCCGTACGACAGGACCAAGCGCATGGTCATCCCCGACGCGCTCAAgtacgtcggattcgcttgttgtttggatattttctttttgtgattattgtaattgtgcacgagcgattggtctaatggtgtttgtttggtgccgaattgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211518733|gb|FK951840.1|FK951840
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGC
EST: gi|37387327|gb|CF630856.1|CF630856
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTTCTGAGGCTGCAACCAGGACACAAGTACTGCCTCCTTGGGGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|211068821|gb|FK951863.1|FK951863
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCT
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCT
EST: gi|20336963|gb|BQ172593.1|BQ172593
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|7162350|gb|AW519972.1|AW519972
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTTCTGAGGCTGCAACCAGGACACAAGTACTGCCTCCTTGGGGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|15427295|gb|BI543117.1|BI543117
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|7162634|gb|AW520256.1|AW520256
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTTCTGAGGCTGCAACCAGGACACAAGTACTGCCTCCTTGGGGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|211071555|gb|FK951876.1|FK951876
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTTCTGAGGCTGCAACCAGGACACAAGTACTGCCTCCTTGGGGAACTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|18180385|gb|BM381595.1|BM381595
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|211066077|gb|FK951849.1|FK951849
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAG
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAG
EST: gi|211068815|gb|FK951857.1|FK951857
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCCGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|24768412|gb|CA403541.1|CA403541
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTTCTGAGGCTGCAACCAGGACACAAGTACTGCCTCCTTGGGGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|19770488|gb|BQ035209.1|BQ035209
EST:     CCGCCGCCGTACGACAAGACTAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTTCTGAGGCTGCAACCAGGACACAAGTACTGCCTCCTTGGGGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|74246018|gb|DT653932.1|DT653932
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|9566387|gb|BE475896.1|BE475896
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGGCCTGAGGCTGCAACCTGGACACAAGTAC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTAC
EST: gi|89252055|gb|DY623841.1|DY623841
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAAC-TGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|89761984|gb|DY689785.1|DY689785
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|60351123|gb|DN218096.1|DN218096
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|148931533|gb|EC874588.2|EC874588
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|28983628|gb|BQ538749.2|BQ538749
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|211074298|gb|FK951895.1|FK951895
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|91049188|gb|EB159606.1|EB159606
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAAC-TGGACACAAGTACTGCCTCCTTGGTGAGCTTTT
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|76014492|gb|DT941662.1|DT941662
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|211077040|gb|FK951908.1|FK951908
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|211068822|gb|FK951864.1|FK951864
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGNACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|18179456|gb|BM380666.1|BM380666
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|7227548|gb|AW566189.1|AW566189
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTTCTGAGGCTGCAACCAGGACACAAGTACTGCCTCCTTGGGGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|5018390|gb|AI714583.1|AI714583
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|60340934|gb|DN207907.1|DN207907
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|89249167|gb|DY620953.1|DY620953
EST:     CCGCCCCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|22542946|gb|BU093384.1|BU093384
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|15082732|gb|BI389416.1|BI389416
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|211077036|gb|FK951904.1|FK951904
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|89761874|gb|DY689713.1|DY689713
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|16925939|gb|BM079007.1|BM079007
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|71427272|gb|DR808322.1|DR808322
EST:     CCGCCCCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTTTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTT
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|211071560|gb|FK951881.1|FK951881
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTTCTGAGGCT
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCT
EST: gi|213179419|gb|FM183147.1|FM183147
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTTCTGAGGCTGCAACCAGGACACAAGTACTGCCTCCTTGGGGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|211077038|gb|FK951906.1|FK951906
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GATCCTGAGGCTGCAACCTGGACACAAGTACT
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACT
EST: gi|21390089|gb|BQ528138.1|BQ528138
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|74241755|gb|DT649669.1|DT649669
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|9731552|gb|BE510304.1|BE510304
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACT
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACT
EST: gi|211066076|gb|FK951848.1|FK951848
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAAC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAAC
EST: gi|148943616|gb|EC888679.2|EC888679
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|22542431|gb|BU092869.1|BU092869
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTT
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|4835156|gb|AI670382.1|AI670382
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|18180509|gb|BM381719.1|BM381719
EST:     GACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: GACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|14529422|gb|BI096555.1|BI096555
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|89759041|gb|DY687990.1|DY687990
EST:     CCGCCGCCGTACGACAAGACCAAGCTCCTGGTCATCCCTGACGCTCTTAA                         AGTCCTGAGGCTGC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGC
EST: gi|148943617|gb|EC888680.2|EC888680
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|9461296|gb|BE453662.1|BE453662
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTT
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|211313741|gb|FL422329.1|FL422329
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|211068817|gb|FK951859.1|FK951859
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|14364820|gb|BG946631.1|BG946631
EST:     CCGCCGTACGACAAGACCAAGGCGGCCTGGTCATGCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGTACGACAAGACCAA-GC-GCCTGGTCAT-CCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|78027277|gb|DV495664.1|DV495664
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|9731083|gb|BE509835.1|BE509835
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCCTGGTGAGCCTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|211074303|gb|FK951900.1|FK951900
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|31353275|gb|CD437632.1|CD437632
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTTCTGAGGCTGCAACCAGGACACAAGTACTGCCTCCTTGGGGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|149020931|gb|EE045767.2|EE045767
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|18385232|gb|BM418431.1|BM418431
EST:     CCGCCGCCGTACGACAAGACTAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTTCTGAGGCTGCAACCAGGACACAAGTACTGCCTCCTTGGGGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|21391120|gb|BQ529169.1|BQ529169
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|211071564|gb|FK951885.1|FK951885
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTTCTGAGGCTGCAACC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACC
EST: gi|5108459|gb|AI740172.1|AI740172
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|71443776|gb|DR824826.1|DR824826
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|22543243|gb|BU093681.1|BU093681
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|20802945|gb|BQ293995.1|BQ293995
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|211323996|gb|FL416228.1|FL416228
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|211518734|gb|FK951841.1|FK951841
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTT
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTT
EST: gi|16918423|gb|BM073738.1|BM073738
EST:     CCCCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTTTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTT
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|211074290|gb|FK951887.1|FK951887
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|15427079|gb|BI542901.1|BI542901
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|91872964|gb|EB402921.1|EB402921
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|21331365|gb|BQ486746.1|BQ486746
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|22542317|gb|BU092755.1|BU092755
EST:     CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST: gi|211075474|gb|FL339570.1|FL339570
EST:     GCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA                         GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: GCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 319

CCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAAGACGTACGAGGGCGTCCCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTCTAAGGAGGTCGGATGGAACTACCATGACACCATCAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 227

CCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAAGACGTACGAGGGCGTCCCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTCTAAGGAGGTCGGATGGAACTACCATGACACCATCAGG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 285

CCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAAGACGTACGAGGGCGTCCCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTCTAAGGAGGTCGGATGGAACTACCATGACACCATCAGG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 143

CCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAAGACGTACGAGGGCGTCCCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTCTAAGGAGGTCGGATGGAACTACCATGACACCATCAGG