1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCAAGAAGGCGTACGAGCTCTCCATCCTCTGCGACGCCGAGGTCGCGCTCGTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGAgtaatcaaaccaaacaaccctatatattacacatatatattcgcttcagtcattcccctctctttttttttgttacctaattcttcctagctactactac...
species | Zea mays |
transcript | GRMZM2G071620_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGA TCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGAEST: gi|78104753|gb|DV523171.1|DV523171
genomic: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGAgtaatcaaac ... ttaataccagTCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGA
EST: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGA TCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGAEST: gi|21331630|gb|BQ487011.1|BQ487011
genomic: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGAgtaatcaaac ... ttaataccagTCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGA
EST: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGA TCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGAEST: gi|211444422|gb|FL322992.1|FL322992
genomic: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGAgtaatcaaac ... ttaataccagTCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGA
EST: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGA TCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGAEST: gi|78085639|gb|DV514032.1|DV514032
genomic: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGAgtaatcaaac ... ttaataccagTCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGA
EST: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGA TCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGAEST: gi|31909804|gb|CD651102.1|CD651102
genomic: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGAgtaatcaaac ... ttaataccagTCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGA
EST: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGA TCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGAEST: gi|211399635|gb|FL347339.1|FL347339
genomic: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGAgtaatcaaac ... ttaataccagTCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGA
EST: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGA TCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGAEST: gi|71436647|gb|DR817697.1|DR817697
genomic: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGAgtaatcaaac ... ttaataccagTCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGA
EST: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGA TCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGAEST: gi|50326015|gb|CO521141.1|CO521141
genomic: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGAgtaatcaaac ... ttaataccagTCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGA
EST: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGA TCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGAEST: gi|211530058|gb|FL388005.1|FL388005
genomic: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGAgtaatcaaac ... ttaataccagTCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGA
EST: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGA TCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGAEST: gi|71448410|gb|DR829460.1|DR829460
genomic: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGAgtaatcaaac ... ttaataccagTCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGA
EST: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGA TCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGAEST: gi|101383824|gb|EB813967.1|EB813967
genomic: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGAgtaatcaaac ... ttaataccagTCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGA
EST: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGA TCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGAEST: gi|93016628|gb|EB642148.1|EB642148
genomic: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGAgtaatcaaac ... ttaataccagTCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGA
EST: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGA TCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGAEST: gi|71436011|gb|DR817061.1|DR817061
genomic: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGAgtaatcaaac ... ttaataccagTCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGA
EST: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGA TCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGAEST: gi|50325855|gb|CO520981.1|CO520981
genomic: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGAgtaatcaaac ... ttaataccagTCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGA
EST: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGA TCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGAEST: gi|31558053|gb|CD527265.1|CD527265
genomic: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGAgtaatcaaac ... ttaataccagTCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGA
EST: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGA TCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGAEST: gi|211467003|gb|FL313839.1|FL313839
genomic: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGAgtaatcaaac ... ttaataccagTCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGA
EST: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGA TCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGAEST: gi|30031661|gb|CB833512.1|CB833512
genomic: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGAgtaatcaaac ... ttaataccagTCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGA
EST: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGA TCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGAEST: gi|76285216|gb|DV024784.1|DV024784
genomic: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGAgtaatcaaac ... ttaataccagTCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGA
EST: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGA TCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGA
genomic: GTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGAgtaatcaaac ... ttaataccagTCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAGAAGGCGTACGAGCTCTCCATCCTCTGCGACGCCGAGGTCGCGCTCGTCCTCTTCTCCCACGCCGGCCGCCTCTACCAGTTCTCATCCTCCTCCGAgtaatcaaaccaaacaaccctatatattacacatatatattcgcttcagtcattcccctctctttttttttgttacctaattcttcctagctactactac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctctc