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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGCCCTCGACTTCGCGGCATGGAGCTTCAATGTCACCACGTCGGTCGGACTCATCATGGTCAACAAGGCGTTGATGGCTACGTATGGATTCAGTTTTGgtacgcctgtgctctgctcacctggtgatttgtaatttatcgtcatacatgaatatattatatatctgactctcacctctggcctcttgctcttgtgctt...

Basic information

species Zea mays
transcript GRMZM2G071378_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G071378_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g05830.1 (Oryza sativa), 5'ss of exon 2
GCCGCCCTCGACTTCGCGGCATGGAGCTTCAATGTCACCACGTCGGTCGGACTCATCATGGTCAACAAGGCGTTGATGGCTACGTATGGATTCAGTTTTGgtacgcctgtgctctgctcacctggtgatttgtaatttatcgtcatac-atgaatatattatatatctgactctcacctctggcctcttgctcttgtgctt--
   |  || || || ||||||||||| |||||  |||||||||| || ||| |||||||||||||||||||  ||||||||||| ||||||||||||| |||  |  |||    ||||  | |      |  |  ||  |  |  |   ||||  || || |||    | ||  |   || |   |||   |      ||   
AAGGTGCTGGATTTTGCGGCATGGAGTTTCAACATCACCACGTCTGTTGGAATCATCATGGTCAACAAGGCTCTGATGGCTACGCATGGATTCAGTTTCGgtgtgtgtgttacttgctaccttcagatatcttggttctttattttgtgatgatgatgttttattctaggcttac---tccgtgttctgaatgacaaactagc

upper sequence: GRMZM2G071378_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g05780.3 (Oryza sativa), 5'ss of exon 2
GCCGCCCTCGACTTCGCGGCATGGAGCTTCAATGTCACCACGTCGGTCGGACTCATCATGGTCAACAAGGCGTTGATGGCTACGTATGGATTCAGTTTTGgtacgcctgtgctctgctcacctggtgatttgtaatttatcgt----catacatgaatatattatatatctgactctc--acctctggcctcttgctcttgtgctt
   |  || || || ||||||||||| |||||  ||||||| || || ||| |||||||||||||||||||  ||||||||||  ||||||||||||| |||| |  |    | |||| ||||   ||| | || ||| |  |     || |  |  ||     | |    |  |  |  || |   |  |  || | || |  | 
AAGGTGCTAGATTTTGCGGCATGGAGTTTCAACATCACCACATCCGTTGGAATCATCATGGTCAACAAGGCTCTGATGGCTACACATGGATTCAGTTTCGgtatgttt----tttgct-accttaagatatatattttgtgatgttttattccaggctactccgtgttctgggatgacaaacttgcagtattatgttgttttagt-

upper sequence: GRMZM2G071378_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 2
GCCGCCCTCGACTTCGCGGCATGGAGCTTCAATGTCACCACGTCGGTCGGACTCATCATGGTCAACAAGGCGTTGATGGCTACGTATGGATTCAGTTTTGgtacgcctgtgct--ctgctcacctggtgatttgtaatttatcgtcatacatgaatatattatatatctgactctcacctctggcctcttgctcttgtgctt-
||  |  | ||    || |||||||  ||||||||   ||| ||||| ||| |||| ||||||||||| || || |||||||| ||||||||||||||||||| | |  |  |  ||    |||       || ||||  ||  | ||       |||||||   ||  ||   |      ||   | |  ||  ||   || 
GCAACTGTTGATGCTGCCGCATGGATGTTCAATGTTGTCACTTCGGTTGGAATCATTATGGTCAACAAAGCCTTAATGGCTACATATGGATTCAGTTTTGgtatgtccctcatgactatcaacccacacgctt-taatcaat--ttatcagcctttatattactcatacgatagttctaaatgcattgtgtcttatgcatttc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71769227|gb|DR967164.1|DR967164
EST:     ACTCATCATGGTCAACAAGGCGTTGATGGCTACGTATGGATTCAGTTTTG                         GAGTTGCAGTCTGCACAGTTACTGATGTCAGTGTGAATGCAAGAGGTCTAA
genomic: ACTCATCATGGTCAACAAGGCGTTGATGGCTACGTATGGATTCAGTTTTGgtacgcctgt ... gtgcttatagGAGTTGCAGTCTGCACAGTTACTGATGTCAGTGTGAATGCAAGAGGTCTAA