Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCGTTCACAATGGCCCGTGTGTATGTCGGCAACTTGGATGCACGCGTGACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcacttctgtcaaacttatcccggttttgtagaaacttctttttgtagttttttccatgttttcccttgagccttgaaggcttggcaagccaatg...

Basic information

species Zea mays
transcript GRMZM2G070239_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070239_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g54770.1 (Oryza sativa), 5'ss of exon 2
ATTCGTTCACAATGGCCCGTGTGTATGTCGGCAACTTGGATGCACGCGTGACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcacttctgtcaaacttatcccggttttgtagaaacttctttttgtagttttttccatgttttcccttgagcct-tgaaggctt--ggcaagccaatg
||| |||||| ||||||||  ||||||| |||||||||||| | || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |   ||||| | |    ||        |  |   | ||   | | | |||||| |  |||  | | ||   | | || ||  ||  |  |  | | | 
ATTTGTTCACGATGGCCCGCTTGTATGTTGGCAACTTGGATCCCCGAGTGACTTCCGGGGAACTTGAAGATGAGTTTCGTGTGTTTGGAGTTCTGCGAAGgtcagt---ttctgcctaggcaatttttccacttcatctaattgggtgtttggtttttgcattgtgctgcattagtcttgtgtagtttttggatagactagtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22819738|gb|BU499828.1|BU499828
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211015358|gb|FK984053.1|FK984053
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211009789|gb|FK984014.1|FK984014
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211012572|gb|FK984033.1|FK984033
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|71430460|gb|DR811510.1|DR811510
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211015359|gb|FK984054.1|FK984054
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211007022|gb|FK984004.1|FK984004
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|67041575|gb|CO467830.1|CO467830
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211012573|gb|FK984034.1|FK984034
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211018134|gb|FK984060.1|FK984060
EST:     ACTTCCGGGTAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211009794|gb|FK984019.1|FK984019
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|60340914|gb|DN207887.1|DN207887
EST:     TGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: TGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211018138|gb|FK984064.1|FK984064
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|78179171|gb|DV549544.1|DV549544
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211018136|gb|FK984062.1|FK984062
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211009788|gb|FK984013.1|FK984013
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|71430461|gb|DR811511.1|DR811511
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211015356|gb|FK984051.1|FK984051
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGT--CACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211018131|gb|FK984057.1|FK984057
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211007019|gb|FK984001.1|FK984001
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTKACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|33467584|gb|CF244633.1|CF244633
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211012569|gb|FK984030.1|FK984030
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|30705227|gb|CD058704.1|CD058704
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211165217|gb|FK984072.1|FK984072
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211007021|gb|FK984003.1|FK984003
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211018130|gb|FK984056.1|FK984056
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211007020|gb|FK984002.1|FK984002
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|31356601|gb|CD440958.1|CD440958
EST:     C-TCCTGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGCTTTTGCATTTATTGATTTTGACGA
genomic: CTTCC-GGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|50326514|gb|CO521640.1|CO521640
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211165222|gb|FK984077.1|FK984077
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211015346|gb|FK984041.1|FK984041
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211012565|gb|FK984026.1|FK984026
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211012571|gb|FK984032.1|FK984032
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTKACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|29130665|gb|CB381369.1|CB381369
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|32943212|gb|CF048031.1|CF048031
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|87156333|gb|DY401122.1|DY401122
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|148983454|gb|EE029469.2|EE029469
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211165218|gb|FK984073.1|FK984073
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211165223|gb|FK984078.1|FK984078
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211015350|gb|FK984045.1|FK984045
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|76012688|gb|DT939858.1|DT939858
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211012574|gb|FK984035.1|FK984035
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211007025|gb|FK984007.1|FK984007
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211015357|gb|FK984052.1|FK984052
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211165220|gb|FK984075.1|FK984075
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211165216|gb|FK984071.1|FK984071
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211018143|gb|FK984069.1|FK984069
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211165219|gb|FK984074.1|FK984074
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211018139|gb|FK984065.1|FK984065
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211012576|gb|FK984037.1|FK984037
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211009798|gb|FK984023.1|FK984023
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211015347|gb|FK984042.1|FK984042
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|22521212|gb|BU080023.1|BU080023
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|30031727|gb|CB833578.1|CB833578
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211009797|gb|FK984022.1|FK984022
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211009795|gb|FK984020.1|FK984020
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211015351|gb|FK984046.1|FK984046
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211009787|gb|FK984012.1|FK984012
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211018133|gb|FK984059.1|FK984059
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211007027|gb|FK984009.1|FK984009
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|89756822|gb|DY686699.1|DY686699
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211012575|gb|FK984036.1|FK984036
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211018132|gb|FK984058.1|FK984058
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211009796|gb|FK984021.1|FK984021
EST:     ACTTCCGGGTAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|22935529|gb|BU571804.1|BU571804
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211009785|gb|FK984010.1|FK984010
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|6918354|gb|AW399884.1|AW399884
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211009792|gb|FK984017.1|FK984017
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211009793|gb|FK984018.1|FK984018
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211165221|gb|FK984076.1|FK984076
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211015355|gb|FK984050.1|FK984050
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|149061145|gb|EE157405.2|EE157405
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211018141|gb|FK984067.1|FK984067
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
EST: gi|211007026|gb|FK984008.1|FK984008
EST:     ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAG                         TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: ACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcact ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTCGTTCACAATGGCCCGTGTGTATGTCGGCAACTTGGATGCACGCGTGACTTCCGGGGAACTCGAAGATGAGTTCCGTGTGTTTGGAGTTCTGCGAAGgtcactcacttctgtcaaacttatcccggttttgtagaaacttctttttgtagttttttccatgttttcccttgagccttgaaggcttggcaagccaatg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG