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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGGGAGGATGTCGGAGCCTTCCAAGGTAATCCACATCCGCAACGTCGGGCACGAGATTGCCGAGgtatgtaggggatcagttaatgggaaatctttaatcttttgggctttgttctttctggggtcaaattttaatccgattgtttggtttatgcgaaagatttgattattagctattctcccaccgctcccctgccgttgtgtttgcag

Basic information

species Zea mays
transcript GRMZM2G070113_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070113_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g36120.1 (Oryza sativa), 5'ss of exon 2
----------------------TGCGGG-AGGATGTCGGAGCCTTCCAAGGTAATCCACATCCGCAACGTCGGGCACGAGATTGCCGAGgtatgtaggggatcagttaatgggaaatctttaatcttttgggctttgttctttctggggtcaaatt----ttaatccgattgtttggttta--tgcgaaagatttgat-----tattagctattctcccaccgctcccctgccgttgtgtttgcag
                      |||||| |||||| ||||||| || ||||| ||||||||||| |||||||||||||| || || |||||     | ||||    |  |||   ||||||  | | ||   |||| |   ||  | | | |   |     ||    ||| |||||||||   || ||||| |||  |     ||    || ||| | ||| |||    ||| |||||  | |   
GTAGACCTGTGGTGTGGTGCGGTGCGGGGAGGATGGCGGAGCCGTCTAAGGTGATCCACATCCGGAACGTCGGGCACGAAATCGCTGAGgtg-acggaggattgaatcgtgg---atcttttgtttcttctcctttctggatttcgtgcttattatgtgcctagatagatggtttggttttactgtgaaagctttattacctttacggcctgttcgctcactgctttgttgctgttgttgtag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211448116|gb|FL293418.1|FL293418
EST:     AGCCTTCCAAGGTAATCCACATCCGCAACGTCGGGCACGAGATTGCCGAG                         TCTGATCTCCTTCAGCTGCTGCAGCCGGTTCGGCGTGGTCTCCAAGATCGT
genomic: AGCCTTCCAAGGTAATCCACATCCGCAACGTCGGGCACGAGATTGCCGAGgtatgtaggg ... gtgtttgcagTCTGATCTCCTTCAGCTGCTGCAGCCG-TTCGGCGTGGTCTCCAAGATCGT
EST: gi|31360867|gb|CD445224.1|CD445224
EST:     AGCCTTCCAAGGTAATCCACATCCGCAACGGCGGGCACGAGATTGCCGAG                         TCTGATCTCCTTCAGCTGCTGCAGCCGTTCGGCGTGGTCTCCAAGATCGTC
genomic: AGCCTTCCAAGGTAATCCACATCCGCAACGTCGGGCACGAGATTGCCGAGgtatgtaggg ... gtgtttgcagTCTGATCTCCTTCAGCTGCTGCAGCCGTTCGGCGTGGTCTCCAAGATCGTC