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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCCGGACCATATGGCACTTTTGTTGGCGTTTACGATGGACATGGTGGTCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAAgtaacttgctaacctttaaatctgagcagtagcattattcccatttcttagtactatatctggatttggctttcagtttgcacttaaggagtgatccagtgatcaatccattctttcatggcttgtatttag

Basic information

species Zea mays
transcript GRMZM2G069970_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069970_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g50380.3 (Oryza sativa), 5'ss of exon 2
GATTCCGGACCATATGGCACTTTTGTTGGCGTTTACGATGGACATGGTGGTCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAAgtaacttgctaacctttaaatctgagcagtagcattattcccatttcttagtactatatctggatttggctttcagtttgcacttaaggagtgatccagtgatcaatccattctttcatggcttgtatt-tag-----------------
|| || || ||||| || ||||| || || ||||| |||||||||||||| ||||||||||| ||||||||||| ||||| || |||||  ||||||||||||| ||| ||     | |   |  ||| |||  || ||           | ||||  ||   | |  | |||               |||  || |  ||| || | ||||||| |||||||| ||||  ||                 
GACTCTGGTCCATACGGAACTTTCGTCGGGGTTTATGATGGACATGGTGGCCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAAgtaa-ttgata----ctgacagtatgcactagtgttgtttt---------gcactacttccatactgtgtttt--------------agagcaattccatgaccatttcattcttccatggcttatattgcagggtttgcatctgaacag

upper sequence: GRMZM2G069970_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g50380.1 (Oryza sativa), 5'ss of exon 3
GATTCCGGACCATATGGCACTTTTGTTGGCGTTTACGATGGACATGGTGGTCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAAgtaacttgctaacctttaaatctgagcagtagcattattcccatttcttagtactatatctggatttggctttcagtttgcacttaaggagtgatccagtgatcaatccattctttcatggcttgtatt-tag
|| || || ||||| || ||||| || || ||||| |||||||||||||| ||||||||||| ||||||||||| ||||| || |||||  ||||||||||||| ||| ||     | |   |  ||| |||  || ||           | ||||  ||   | |  | |||               |||  || |  ||| || | ||||||| |||||||| ||||  ||
GACTCTGGTCCATACGGAACTTTCGTCGGGGTTTATGATGGACATGGTGGCCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAAgtaa-ttgata----ctgacagtatgcactagtgttgtttt---------gcactacttccatactgtgtttt--------------agagcaattccatgaccatttcattcttccatggcttatattgcag

upper sequence: GRMZM2G069970_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv03s0038g02650.t01 (Vitis vinifera), 5'ss of exon 2
GATTCCGGACCATATGGCACTTTTGTTGGCGTTTACGATGGACATGGTGGTCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAAgtaacttgctaacctttaaatctgagcagtagcattattcccatttcttagtactatatctggatttggctttcagtttgcacttaaggagtgatccagtgatcaatccattctttcatggcttgtatttag
|| || || || ||||| || ||||||||  |||| ||||| |||||||| || ||||||||| | || ||||||||||| ||||||||  |||| || ||||| || ||     |  | |   |   | | | | | |    ||||||||  ||  || ||| | |     |  ||||    | ||| | |     |     ||| |                        
GAGTCTGGCCCTTATGGTACCTTTGTTGGAATTTATGATGGGCATGGTGGACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGAgtaagttactgcaactgtattgcaatttggaacttcaatt---tttcttag--ctgcat-tggctgta----tatgtttatggtaaagaattttcttacctgccaaccgg----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5928871|gb|AW056163.1|AW056163
EST:     TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAA                         GGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGT
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGT
EST: gi|78086197|gb|DV514590.1|DV514590
EST:     TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAA                         GGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGT
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGT
EST: gi|211178849|gb|FL219806.1|FL219806
EST:     TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGNAAA                         GGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGT
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGT
EST: gi|148970773|gb|EE021521.2|EE021521
EST:     TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAA                         GGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGT
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGT
EST: gi|149085363|gb|EE174870.2|EE174870
EST:     TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAA                         GGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGT
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGT
EST: gi|93283061|gb|EB675325.1|EB675325
EST:     TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAA                         GGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGT
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGT