1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CATCAACCAAGGAAGGAGGAGGACAAATGATAGGTTGAGGCGTGCAGACAGAGAGGACAGCGTTAGGCGAACTGTTTATGTCTCTGAACTTGATCATACTgtgagtagttgatggttgcttcagcactcattgctatatattaaagattcttgggttgttataagatctaatgatgttgaccatctgttag
species | Zea mays |
transcript | GRMZM2G069816_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGAGGACAGCGTTAGGCGAACTGTTTATGTCTCTGAACTTGATCATACT GTGACAGAGGAGAGACTTGCTGATATCTTTGCTACCTGTGGGCATEST: gi|37385479|gb|CF629884.1|CF629884
genomic: GAGAGGACAGCGTTAGGCGAACTGTTTATGTCTCTGAACTTGATCATACTgtgagtagtt ... catctgttagGTGACAGAGGAGAGACTTGCTGATATCTTTGCTACCTGTGGGCAT
EST: GAGAGGACAGCGTTAGGCGAACTGTTTATGTCTCTGAACTTGATCATACT GTGACAGACGAGAGACTTGCTGATATCTTTGCTACCTGTGGGCATEST: gi|148948792|gb|EC894194.2|EC894194
genomic: GAGAGGACAGCGTTAGGCGAACTGTTTATGTCTCTGAACTTGATCATACTgtgagtagtt ... catctgttagGTGACAGAGGAGAGACTTGCTGATATCTTTGCTACCTGTGGGCAT
EST: GAGAGGACAGCGTTAGGCGAACTGTTTATGTCTCTGAACTTGATCATACT GTGACAGAGGAGAGACTTGCTGATATCTTTGCTACCTGTGGGCATEST: gi|149097331|gb|EE183163.2|EE183163
genomic: GAGAGGACAGCGTTAGGCGAACTGTTTATGTCTCTGAACTTGATCATACTgtgagtagtt ... catctgttagGTGACAGAGGAGAGACTTGCTGATATCTTTGCTACCTGTGGGCAT
EST: GAGAGGACAGCGTTAGGCGAACTGTTTATGTCTCTGAACTTGATCATACT GTGACAGAGGAGAGACTTGCTGATATCTTTGCTACCTGTGGGCATEST: gi|78104074|gb|DV522492.1|DV522492
genomic: GAGAGGACAGCGTTAGGCGAACTGTTTATGTCTCTGAACTTGATCATACTgtgagtagtt ... catctgttagGTGACAGAGGAGAGACTTGCTGATATCTTTGCTACCTGTGGGCAT
EST: GAGAGGACAGCGTTAGGCGAACTGTTTATGTCTCTGAACTTGATCATACT GTGACAGAGGAGAGACTTGCTGATATCTTTGCTACCTGTGGGCATEST: gi|149096648|gb|EE182414.2|EE182414
genomic: GAGAGGACAGCGTTAGGCGAACTGTTTATGTCTCTGAACTTGATCATACTgtgagtagtt ... catctgttagGTGACAGAGGAGAGACTTGCTGATATCTTTGCTACCTGTGGGCAT
EST: GAGAGGACAGCGTTAGGCGAACTGTTTATGTCTCTGAACTTGATCATACT GTGACAGAGGAGAGACTTGCTGATATCTTTGCTACCTGTGGGCAT
genomic: GAGAGGACAGCGTTAGGCGAACTGTTTATGTCTCTGAACTTGATCATACTgtgagtagtt ... catctgttagGTGACAGAGGAGAGACTTGCTGATATCTTTGCTACCTGTGGGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCAACCAAGGAAGGAGGAGGACAAATGATAGGTTGAGGCGTGCAGACAGAGAGGACAGCGTTAGGCGAACTGTTTATGTCTCTGAACTTGATCATACTgtgagtagttgatggttgcttcagcactcattgctatatattaaagattcttgggttgttataagatctaatgatgttgaccatctgttag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA