1 5' 3' | 2 5' 3' | 3 5' 3' |
GCCAACGTCGGCGACTCCCGGGCCGTGTTGGGCACCACGTCCGACGATGGCGCCATTGCGGCTGTCCAGCTCACCGTCGACCTAAAGCCTAACCTGCCACgtaagtcgctaccgaccggtggccgaccgtgtgttcttgtgtgtgcgctgggacggcggtgtacatgcgttgcaacagttgctgacgttgtgtcctggaatgtgatggtgcatgcag
species | Zea mays |
transcript | GRMZM2G069713_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGCCATTGCGGCTGTCCAGCTCACCGTCGACCTAAAGCCTAACCTGCCAC AGGAGAAGGAGCGCATCCGGCGGTGCAATGGTCAAGTATACTGCCTCGCCGEST: gi|149087973|gb|EE287216.2|EE287216
genomic: CGCCATTGCGGCTGTCCAGCTCACCGTCGACCTAAAGCCTAACCTGCCACgtaagtcgct ... gtgcatgcagAGGAGAAGGAGCGCATCCGGCGGTGCAATGGTCAAGTGTACTGCCTCGCCG
EST: CTGTCCAGCTCACCGTCGACCTAAAGCCTAACCTGCCAC AGGAGAAGGAGCGCATCCGGCGGTGCAATGGTCAAGTGTACTGCCTCGCCGEST: gi|78110759|gb|DV529157.1|DV529157
genomic: CTGTCCAGCTCACCGTCGACCTAAAGCCTAACCTGCCACgtaagtcgct ... gtgcatgcagAGGAGAAGGAGCGCATCCGGCGGTGCAATGGTCAAGTGTACTGCCTCGCCG
EST: CGCCATTGCGGCTGTCCAGCTCACCGTCGACCTAAAGCCTAACCTGCCAC AGGAGAAGGAGCGCATCCGGCGGTGCAATGGTCAAGTGTACTGCCTCGCCGEST: gi|78087334|gb|DV515727.1|DV515727
genomic: CGCCATTGCGGCTGTCCAGCTCACCGTCGACCTAAAGCCTAACCTGCCACgtaagtcgct ... gtgcatgcagAGGAGAAGGAGCGCATCCGGCGGTGCAATGGTCAAGTGTACTGCCTCGCCG
EST: CGCCATTGCGGCTGTCCAGCTCACCGTCGACCTAAAGCCTAACCTGCCAC AGGAGAAGGAGCGCATCCGGCGGTGCAATGGTCAAGTGTACTGCCTCGCCGEST: gi|74246502|gb|DT654416.1|DT654416
genomic: CGCCATTGCGGCTGTCCAGCTCACCGTCGACCTAAAGCCTAACCTGCCACgtaagtcgct ... gtgcatgcagAGGAGAAGGAGCGCATCCGGCGGTGCAATGGTCAAGTGTACTGCCTCGCCG
EST: CGCCATTGCGGCTGTCCAGCTCACCGTCGACCTAAAGCCTAACCTGCCAC AGGAGAAGGAGCGCATCCGGCGGTGCAATGGTCAAGTGTACTGCCTCGCCG
genomic: CGCCATTGCGGCTGTCCAGCTCACCGTCGACCTAAAGCCTAACCTGCCACgtaagtcgct ... gtgcatgcagAGGAGAAGGAGCGCATCCGGCGGTGCAATGGTCAAGTGTACTGCCTCGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAACGTCGGCGACTCCCGGGCCGTGTTGGGCACCACGTCCGACGATGGCGCCATTGCGGCTGTCCAGCTCACCGTCGACCTAAAGCCTAACCTGCCACgtaagtcgctaccgaccggtggccgaccgtgtgttcttgtgtgtgcgctgggacggcggtgtacatgcgttgcaacagttgctgacgttgtgtcctggaatgtgatggtgcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA