1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CTGCTCAAGGTGGCACTGTTGTGTGTTCATCTGAGAAAGTTGAGTTTCTGAAGCTTCAAAATGGCAGgtatgtagttcctttgataatctaatttatttacagtgatataatctcattttactttataaatataatattagaaaaattagggttgaatgttgcattt...
species | Zea mays |
transcript | GRMZM2G069676_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTTGTGTGTTCATCTGAGAAAGTTGAGTTTCTGAAGCTTCAAAATGGCAG TGATATTCGTGGTGTTGCTGTTGCTGGGGTTGAAGGTGAGCCTGTCAACCTEST: gi|18659547|gb|BM500395.1|BM500395
genomic: GTTGTGTGTTCATCTGAGAAAGTTGAGTTTCTGAAGCTTCAAAATGGCAGgtatgtagtt ... tctttggcagTGATATTCGTGGTGTTGCTGTTGCTGGGGTTGAAGGTGAGCCTGTCAACCT
EST: GTTTCTGAAGCTTCAAAATGGCAG TGATATTCGTGGTGTTGCTGTTGCTGGGGTTGAAGGTGAGCCTGTCAACCTEST: gi|78112842|gb|DV531236.1|DV531236
genomic: GTTTCTGAAGCTTCAAAATGGCAGgtatgtagtt ... tctttggcagTGATATTCGTGGTGTTGCTGTTGCTGGGGTTGAAGGTGAGCCTGTCAACCT
EST: GTTGTGTGTTCATCTGAGAAAGTTGAGTTTCTGAAGCTTCAAAATGGCAG TGATATTCGTGGTGTTGCTGTTGCTGGGGTTGAAGGTGAGCCTGTCAACCTEST: gi|32789670|gb|CD941906.1|CD941906
genomic: GTTGTGTGTTCATCTGAGAAAGTTGAGTTTCTGAAGCTTCAAAATGGCAGgtatgtagtt ... tctttggcagTGATATTCGTGGTGTTGCTGTTGCTGGGGTTGAAGGTGAGCCTGTCAACCT
EST: GTTGTGTGTTCATCTGAGAAAGGTGAGTTTCTGAAGCTTCAAAATGGCAG TGATATTCGGGGTGTTGCTGTTGCTGGGGTTGAAGGTGAGCCTGTCAACCTEST: gi|86466000|gb|DY232373.1|DY232373
genomic: GTTGTGTGTTCATCTGAGAAAGTTGAGTTTCTGAAGCTTCAAAATGGCAGgtatgtagtt ... tctttggcagTGATATTCGTGGTGTTGCTGTTGCTGGGGTTGAAGGTGAGCCTGTCAACCT
EST: GTTGTGTGTTCATCTGAAAAAGTTGATTTTCTGAAGCTTCAAAATGGCAG TGATATTCGTGGTGTTGCTGTTGCTGGGGTTGAAGGTGACCCTGTCACCCT
genomic: GTTGTGTGTTCATCTGAGAAAGTTGAGTTTCTGAAGCTTCAAAATGGCAGgtatgtagtt ... tctttggcagTGATATTCGTGGTGTTGCTGTTGCTGGGGTTGAAGGTGAGCCTGTCAACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCTCAAGGTGGCACTGTTGTGTGTTCATCTGAGAAAGTTGAGTTTCTGAAGCTTCAAAATGGCAGgtatgtagttcctttgataatctaatttatttacagtgatataatctcattttactttataaatataatattagaaaaattagggttgaatgttgcattt
- - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - TGAAGC