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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCCACCCCGGCAGGCGGCGGACCAACAGCCGCACCAGCATGGCGCAGCGGGACGAGGCCATCCGCCGCACCGTCTACGTCTCCGACATCGATCACCAGgtcccgatccatttcctccccctcaccccgtgtcgtgtcaagtcgcgccggtggggaattttcccttcttccgctagcaggcctacccaccgatatcgat...

Basic information

species Zea mays
transcript GRMZM2G069102_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069102_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 2
CGGCCACCCCGGCAGGCGGCGGACCAACAGCCGCACCAGCATGGCGCAGCGGGACGAGGCCATCCGCCGCACCGTCTACGTCTCCGACATCGATCACCAGgtcccgatccatttcctccccctcaccccgtgtcgtgtcaagtcgcgccggt---ggggaattttcccttcttccgctagcaggcctacccaccgatatcgat---
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GGGCCACGCCGGGAAGCGCCGGATGAACAGCCGCACCAGCATGGCGCAGCGCGACGAGGTCATCCGCCGCACCGTCTACGTCTCCGACATCGATCACCAGgtc---acccacccccacccccacacatggatccggttcatttctctccatttccgccgcgctatcaatcccacaact--ctatttcgcctgtcgat-ttgattcg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94472396|gb|EB701354.1|EB701354
EST:     GCACCGTCTACGTCTCCGACATCGATCACCAG                         GTTACTGAAGAAAACCTCGCAGCACTATTTATAAATTGCGGACAG
genomic: GCACCGTCTACGTCTCCGACATCGATCACCAGgtcccgatcc ... tgttgttcagGTTACTGAAGAAAACCTCGCAGCACTATTTATAAATTGCGGACAG