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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGCCGGGCGAGGCGGACTGCGCCTACTACCTCCGCACGGGCGCCTGCGGCTACGGGGAGCGCTGCCGCTACAACCACCCCCGCGATCGGCCGGCCCCGgtgagaaccagcctaatccacgccgctcccccacccctatccctgctctgctctgtttttgtgtctcgtgctcagctcgatggttactggtgagctaagc...

Basic information

species Zea mays
transcript GRMZM2G069009_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069009_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g15350.1 (Oryza sativa), 5'ss of exon 2
GCGGCCGGGCGAGGCGGACTGCGCCTACTACCTCCGCACGGGCGCCTGCGGCTACGGGGAGCGCTGCCGCTACAACCACCCCCGCGATCGGCCGGCCCCGgtgagaaccagc-ctaatccacgc---cgctcccccacccctatccctgctctgctctgtttttgtgtctcgtgctcagctcgatggttac--tggtgagctaagc
      ||| ||||||||||||| |||||||||||||||||| || |||||||||||||||  |||||||||||||||||| ||||||||  | ||| | |        ||| | ||| | | |   |||| | | || ||| |   |  | |  ||   |  ||  | | |         | |||    |  |  ||   || | 
------GGGGGAGGCGGACTGCGTCTACTACCTCCGCACGGGGGCTTGCGGCTACGGGGAGAACTGCCGCTACAACCACCCGCGCGATCGCGCCGCCGCAGCAGTGgtgagcaccaattccccctctcgctgctctactcctctttttttttttttcacctcctgactttagctacggtgacaatgaccgccctattggattacgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148942067|gb|EC887066.2|EC887066
EST:     GCTACGGGGAGCGCTGCCGCTACAACCACCCCCGCGATCGGCCGGCCCCG                         GTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCT
genomic: GCTACGGGGAGCGCTGCCGCTACAACCACCCCCGCGATCGGCCGGCCCCGgtgagaacca ... tgttttccagGTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCT
EST: gi|78082860|gb|DV511253.1|DV511253
EST:     GCTACGGGGAGCGCTGCCGCTACAACCACCCCCGCGATCGGCCGGCCCCG                         GTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCT
genomic: GCTACGGGGAGCGCTGCCGCTACAACCACCCCCGCGATCGGCCGGCCCCGgtgagaacca ... tgttttccagGTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCT
EST: gi|78082473|gb|DV510885.1|DV510885
EST:     GCTACGGGGAGCGCTGCCGCTACAACCACCCCCGCGATCGGCCGGCCCCG                         GTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCT
genomic: GCTACGGGGAGCGCTGCCGCTACAACCACCCCCGCGATCGGCCGGCCCCGgtgagaacca ... tgttttccagGTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCT
EST: gi|76286604|gb|DV026172.1|DV026172
EST:     GCTACGGGGAGCGCTGCCGCTACAACCACCCCCGCGATCGGCCGGCCCCG                         GTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCT
genomic: GCTACGGGGAGCGCTGCCGCTACAACCACCCCCGCGATCGGCCGGCCCCGgtgagaacca ... tgttttccagGTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCT
EST: gi|149102933|gb|EE288285.2|EE288285
EST:     GCTACGGGGAGCGCTGCCGCTACAACCACCCCCGCGATCGGCCGGCCCCG                         GTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCT
genomic: GCTACGGGGAGCGCTGCCGCTACAACCACCCCCGCGATCGGCCGGCCCCGgtgagaacca ... tgttttccagGTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCT