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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGAGTCGTCGCTGTTCAAGCAGTGGCTGCGGAACCTGCAGTCGGAGAAGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcgtttctgctgctggctcgtcgaattgttgttgtgctctgtgattgattgattggatgacgtttctcaatttgcgctcgattgcgtctggatctgcgatgcag

Basic information

species Zea mays
transcript GRMZM2G069008_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069008_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g03910.1 (Oryza sativa), 5'ss of exon 1
GGTGGAGTCGTCGCTGTTCAAGCAGTGGCTGCGGAACCTGCAGTCGGAGAAGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcgtttctgctgctggctcgtcgaattgttgttgtgctctgtgattgattgattggatgacgtttctcaatttgcgctcgattgcgtctggatctgcgatgcag------------
|||||| || |||||||||| ||||||||||  ||||||||||  ||||||||| |||||||||||||||||||||| ||| | ||   | |||||||||||||    || | |||   |      || ||||    | |    |    |||  |   | ||     ||      |||||    | |  ||  |||  || | ||  || |            
GGTGGAATCCTCGCTGTTCAGGCAGTGGCTGAAGAACCTGCAGGAGGAGAAGGGGGTCCTCACCTACGGGAGGCTGAACCTGAGGCAAATCCTCATCCAGgtgagccacgctactgtctc-actgtgttgaatc--cgctacatttctcgatcaa--aaatgagctgcgcaagcaaattttt-tttgcgtgaatcttaattttcgtcgctgcattgggtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211274443|gb|FL232535.1|FL232535
EST:     AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCNG                         GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
genomic: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
EST: gi|211274444|gb|FL232536.1|FL232536
EST:     AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAG                         GGCGTTGACATNTTCGGGAAACGGGTGGGCTTTCTCAAGTTCA
genomic: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCA
EST: gi|211274431|gb|FL232523.1|FL232523
EST:     AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAG                         GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
genomic: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
EST: gi|211274434|gb|FL232526.1|FL232526
EST:     AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAG                         GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
genomic: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
EST: gi|211274435|gb|FL232527.1|FL232527
EST:     AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAG                         GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
genomic: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
EST: gi|211274436|gb|FL232528.1|FL232528
EST:     AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAG                         GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
genomic: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
EST: gi|149074765|gb|EE163195.2|EE163195
EST:     AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAG                         GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
genomic: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
EST: gi|71311098|gb|DR791863.1|DR791863
EST:     AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAG                         GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
genomic: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
EST: gi|211274445|gb|FL232537.1|FL232537
EST:     AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAG                         GGCGTTGACATGTTCGGGAAACGGGTGGGCCTTCTCAAGTTCAAGGCTGAT
genomic: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
EST: gi|211274441|gb|FL232533.1|FL232533
EST:     AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAG                         GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
genomic: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
EST: gi|211276250|gb|FL232539.1|FL232539
EST:     AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAG                         GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
genomic: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
EST: gi|6021120|gb|AW066048.1|AW066048
EST:     AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAG                         GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
genomic: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
EST: gi|211274437|gb|FL232529.1|FL232529
EST:     AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAG                         GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
genomic: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
EST: gi|148991430|gb|EE032932.2|EE032932
EST:     AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAG                         GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
genomic: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
EST: gi|211274440|gb|FL232532.1|FL232532
EST:     AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAG                         GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
genomic: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
EST: gi|148942503|gb|EC887518.2|EC887518
EST:     AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAG                         GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
genomic: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
EST: gi|67016855|gb|CO445604.1|CO445604
EST:     AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAG                         GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
genomic: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
EST: gi|76926121|gb|DV170728.1|DV170728
EST:     AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAG                         GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
genomic: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
EST: gi|15313833|gb|BI478977.1|BI478977
EST:     AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAG                         GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
genomic: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
EST: gi|211274442|gb|FL232534.1|FL232534
EST:     GGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGGTTCTCATCCAG                         GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
genomic: GGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGG-TTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
EST: gi|211274432|gb|FL232524.1|FL232524
EST:     AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAG                         GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTT
genomic: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTT