Sequence
atgc intronic sequence ATGC exonic sequenceTGTTTAGGAAGACGGTTGCAGATTCCAATGCGCCGGTACAGGAGAAGGCGCTCGATGCCCTTCTCGCGTTCCAGCGAGCTGCTGACGCCGATGCATCAAGgtgtgtgcattcagctgccaagtcattccattcacatctatgcttctgattatttgttatctgcaacgatttatgagttggctcctctcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G068755_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g60040.1 (Oryza sativa), 5'ss of exon 2
TGTTTAGGAAGACGGTTGCAGATTCCAATGCGCCGGTACAGGAGAAGGCGCTCGATGCCCTTCTCGCGTTCCAGCGAGCTGCTGACGCCGATGCATCAAGgtgtgtgcattca-gctgccaagtcattccattcacatctatgcttctgattatttgttatctgcaacgatttatg-agttggctcctctcag
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TGTTTAAGAAGACTGTGGCGGATTCGAACGCGCCGGTGCAGGAGAAGGCGTTGGATGCCCTGCTCGCTTTCCAGCGGGCGGCTGATGCTGATGCATCGAGgtgcgtgcggtcatgatgctagatcattcactgttcggctgtacttctgattgtatttt---tccaatgatatgtgtaattggttggctccag
upper sequence: GRMZM2G068755_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA10G35140.1 (Glycine max), 5'ss of exon 2
TGTTTAGGAAGACGGTTGCAGATTCCAATGCGCCGGTACAGGAGAAGGCGCTCGATGCCCTTCTCGCGTTCCAGCGAGCTGCTGACGCCGATGCATCAAGgtgtgtgcattcagctgccaagtcattccattcacatctatgcttctgattatttgttatctgcaacgatttatgagt--tggctcctctcag------------
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TTTTCAGAAAGACGGTGGCGGATTCGAATGCGCCGGTGCAGGAGAAGGCGCTCGATGCGTTGATTGCTTACTTGCGAGCTGCCGACGCCGACGCCTCGAGgtgaggattttggtgtttttgctcgttgccttc---ctttggaatttgattgcatgtttttttgaggaagttaccgttcttgtatgaatttaaatttgggagtag
upper sequence: GRMZM2G068755_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA20G32430.2 (Glycine max), 5'ss of exon 2
TGTTTAGGAAGACGGTTGCAGATTCCAATGCGCCGGTACAGGAGAAGGCGCTCGATGCCCTTCTCGCGTTCCAGCGAGCTGCTGACGCCGATGCATCAAGgtgtgtgcat---tcagctgccaagtcattccattcacatctatgcttctgatta--tttgttatctgcaacgatttatgagttggctcctctcag---
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TTTTCAGGAAGACGGTGACGGATTCGAATGCGCCGGTGCAAGAGAAGGCGCTCGATGCATTGATTGCGTACTTGCGAGCTGCCGATGCCGACGCCGCGAGgtgaggatttgttttcgttgcctttcgaattggattgcatgttttgttttgaggaagttaccgttctttaatgaatt-tgaatttgaatttgggagtag
upper sequence: GRMZM2G068755_T03 (Zea mays), 5'ss of exon 2
lower sequence: AT2G35630.1 (Arabidopsis thaliana), 5'ss of exon 2
TGTTTAGGAAGACGGTTGCAGATTCCAATGCGCCGGTACAGGAGAAGGCGCTCGATGCCCTTCTCGCGTTCCAGCGAGCTGCTGACGCCGATGCATCAAGgtgtg-tgcattcagctgccaagtcattccattcacatctatgcttctgattatttgttatctgcaacgatttatgagttggctcctctcag-
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TGTTTAGGAAGACGGTGGCAGATTCTAATGCGCCGGTGCAAGAGAAAGCGCTTGATGCATTGATTGCGTTTTTGCGAGCAGCCGATTCAGATGCTGGAAGgtatggtgttgtttatttttattgctttagaaatgggcagagtggagtgttcgtttgc-atgtg-aataattagtttgtttctgcttttgaag
upper sequence: GRMZM2G068755_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv10s0116g00490.t01 (Vitis vinifera), 5'ss of exon 2
TGTTTAGGAAGACGGTTGCAGATTCCAATGCGCCGGTACAGGAGAAGGCGCTCGATGCCCTTCTCGCGTTCCAGCGAGCTGCTGACGCCGATGCATCAAGgtgtgtgcattcagctgccaagtcattccattcacatctatgcttctgattatttgttatctgcaacgatttatgagttggctcct----ctcag------------------------------
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TTTTCAAGAAGGCTGTTGCGGATTCGAATGCGCCGGTTCAGGAGAAGGCCCTCGATGCCCTAATTGCTTTTCTGAAAGCTGCCGACGCTGATGCGGGGAGgta-gagcatt-ggttttagtgttttttaaatcgtttccct-tttgtggtgttttggtttgtgcgtttatgtttgttttgttttttggatttttgaaattgggaaatttccgttgttgcatttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71441120|gb|DR822170.1|DR822170EST: CTCGATGCCCTTCTCGCGTTCCAGCGAGCTGCTGACGCCGATGCATCAAG ATACGCGAAGGAGGTCTGTGATTCAATCGTGGCCAAGTGCCTCACTGGCCG
genomic: CTCGATGCCCTTCTCGCGTTCCAGCGAGCTGCTGACGCCGATGCATCAAGgtgtgtgcat ... ctcctctcagATACGCGAAGGAGGTCTGTGATTCAATCGTGGCCAAGTGCCTCACTGGCCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTTAGGAAGACGGTTGCAGATTCCAATGCGCCGGTACAGGAGAAGGCGCTCGATGCCCTTCTCGCGTTCCAGCGAGCTGCTGACGCCGATGCATCAAGgtgtgtgcattcagctgccaagtcattccattcacatctatgcttctgattatttgttatctgcaacgatttatgagttggctcctctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT