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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTTTGCAAGACCACTGAAACACTGGAACATTCACACCCTCAAGAGGTTACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTCATCAAAATGgtaaagtcttcatagattccagtctcatttacctggctagattcatttcaatctttcctactgtcaatgaattgtgcttttcctgtttggagcgtatata...

Basic information

species Zea mays
transcript GRMZM2G068690_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G068690_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g43870.4 (Oryza sativa), 5'ss of exon 2
ACATTTTGCAAGACCACTGAAACACTGGAACATTCACACCCTCAAGAGGTTACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTCATCAAAATGgtaaagtcttcatagattccagtctca--tttacctggctagattcatttc-aatctttcctactgtcaatgaat-tgtgcttttcctgtttggagcgtatata
 |||||||||||||||| |||| | ||||| | |||||  |||||||| || |||| |||| ||| | || ||||||||| ||  |||||||||||||||||||||||   ||  || | | |||    |||   ||    |  | ||||  ||   || || ||    ||  |  ||  | |  |    |   |  |      
TCATTTTGCAAGACCACCGAAATATTGGAAGACTCACAGTCTCAAGAGATTGCACTCGATAGAACAGCGGTGGGGTCAACACTTCTAAGTCATCAAAATGgtaaagtccgtatttatactattcttgattttgtttgctctggctgattttgaagaatttctgctcagcatacacctgaacctgccgcactgcaaaagct----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71430393|gb|DR811443.1|DR811443
EST:     TACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTCATCAAAATG                         TGTGCTGCACTGCCGGAGTATCAGGGGAAAACGCTGAAATCATGGAAATCA
genomic: TACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTCATCAAAATGgtaaagtctt ... ctttttgcagTGTGCTGCACTGCCGGAGTATCAGGGGAAAACGCTGAAATCATGGAAATCA
EST: gi|22472364|gb|BU036844.1|BU036844
EST:     TACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTCATCAAAATG                         TGTGCTGCACTGCCGGAGTATCAGGGGAAAACGCTGAAATCATGGAAATCA
genomic: TACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTCATCAAAATGgtaaagtctt ... ctttttgcagTGTGCTGCACTGCCGGAGTATCAGGGGAAAACGCTGAAATCATGGAAATCA
EST: gi|87156444|gb|DY401233.1|DY401233
EST:     TACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTCATCAAAATG                         TGTGCTGCACTGCCGGAGTATCAGGGGAAAACGCTGAAATCATGGAAATCA
genomic: TACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTCATCAAAATGgtaaagtctt ... ctttttgcagTGTGCTGCACTGCCGGAGTATCAGGGGAAAACGCTGAAATCATGGAAATCA
EST: gi|93281796|gb|EB674060.1|EB674060
EST:     TACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTCATCAAAATG                         TGTGCTGCACTGCCGGAGTATCAGGGGAAAACGCTGAAATCATGGAAATCA
genomic: TACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTCATCAAAATGgtaaagtctt ... ctttttgcagTGTGCTGCACTGCCGGAGTATCAGGGGAAAACGCTGAAATCATGGAAATCA
EST: gi|22541939|gb|BU092377.1|BU092377
EST:     TACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTCATCAAAATG                         TGTGCTGCACTGCCGGAGTATCAGGGGAAAACGCTGAAATCATGGAAATCA
genomic: TACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTCATCAAAATGgtaaagtctt ... ctttttgcagTGTGCTGCACTGCCGGAGTATCAGGGGAAAACGCTGAAATCATGGAAATCA