1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTGTCCAAGAAGGTGATAGATCTCGATGAACTGAGGATGCTGGCGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgattggctcgccttccggtatttttagcctttgtttccccggtcagagcatgagcatcagaggctttatgtatttgaggcaatggcactgcgat...
species | Zea mays |
transcript | GRMZM2G068392_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTGEST: gi|211170262|gb|FL097991.1|FL097991
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTG
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCEST: gi|38502614|gb|CF972474.1|CF972474
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGC
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTGEST: gi|211170259|gb|FL097988.1|FL097988
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTG
EST: TGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCEST: gi|211168574|gb|FL097971.1|FL097971
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGC
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCEST: gi|211170258|gb|FL097987.1|FL097987
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGC
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCEST: gi|211168582|gb|FL097979.1|FL097979
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGC
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGANCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCEST: gi|211170254|gb|FL097983.1|FL097983
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGC
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTGEST: gi|148935027|gb|EC879068.2|EC879068
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTG
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTGEST: gi|211170266|gb|FL097995.1|FL097995
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTG
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCEST: gi|50324142|gb|CO519268.1|CO519268
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGC
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTGEST: gi|211168573|gb|FL097970.1|FL097970
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTG
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCEST: gi|50331565|gb|CO526691.1|CO526691
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGC
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTGEST: gi|44681890|gb|CK786938.1|CK786938
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTG
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTGEST: gi|211166904|gb|FL097963.1|FL097963
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTG
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTGEST: gi|211170264|gb|FL097993.1|FL097993
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTG
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCEST: gi|50331308|gb|CO526434.1|CO526434
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGC
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTGEST: gi|71433967|gb|DR815017.1|DR815017
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTG
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTGEST: gi|211170257|gb|FL097986.1|FL097986
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTG
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGC
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTCCAAGAAGGTGATAGATCTCGATGAACTGAGGATGCTGGCGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgattggctcgccttccggtatttttagcctttgtttccccggtcagagcatgagcatcagaggctttatgtatttgaggcaatggcactgcgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG