Sequence
atgc intronic sequence ATGC exonic sequenceGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacattttgtaatgcatatcactgctttacatgttcatgtacagtaaagttaatgattaccttgactctttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G067476_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g01307.1 (Oryza sativa), 5'ss of exon 2
GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacattttgtaatgcatatcactgctttacatgttcatgtacagt---aaagttaatga--ttaccttgact-ctttcag
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AACTGCCTATGATGTGAGCATTAATGATGATACTTGGCCAAAGGAGGCATTTGAGCTTGTCTCTGGAGAGATGTCAAAGACATTGGAAAGGCTTGACCCgtgagtgcatttcatgcagcatctctctgctatgtgattcattataaggtgttacaggaaatgactttatctttgttgcttctag
upper sequence: GRMZM2G067476_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g01307.2 (Oryza sativa), 5'ss of exon 2
GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacattttgtaatgcatatcactgctttacatgttcatgtacag---taaagttaatga--ttaccttgact-ctttcag
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----------------------------------------------------------------------ATGTCAAAGACATTGGAAAGGCTTGACCCgtgagtgcatttcatgcagcatctctctgctatgtgattcattataaggtgttacaggaaatgactttatctttgttgcttctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18649160|gb|BM497979.1|BM497979EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCGCACACATATGTCCTGGAGACCNAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacattttgtaatgcatatcactgctttacatgttcatgtacagtaaagttaatgattaccttgactctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA