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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacattttgtaatgcatatcactgctttacatgttcatgtacagtaaagttaatgattaccttgactctttcag

Basic information

species Zea mays
transcript GRMZM2G067476_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G067476_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g01307.1 (Oryza sativa), 5'ss of exon 2
GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacattttgtaatgcatatcactgctttacatgttcatgtacagt---aaagttaatga--ttaccttgact-ctttcag
 |||||||||||||||  ||||||||| ||  |||||||||  || |  |||||||||||| |||||||||  || ||||||||||||||||||||||||||||| |||||  |   |||| || ||||| |     |   | ||  ||   | ||  |||||  ||| |||   | |||  ||
AACTGCCTATGATGTGAGCATTAATGATGATACTTGGCCAAAGGAGGCATTTGAGCTTGTCTCTGGAGAGATGTCAAAGACATTGGAAAGGCTTGACCCgtgagtgcatttcatgcagcatctctctgctatgtgattcattataaggtgttacaggaaatgactttatctttgttgcttctag

upper sequence: GRMZM2G067476_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g01307.2 (Oryza sativa), 5'ss of exon 2
GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacattttgtaatgcatatcactgctttacatgttcatgtacag---taaagttaatga--ttaccttgact-ctttcag
                                                                      |  || ||||||||||||||||||||||||||||| |||||  |   |||| || ||||| |     |   | ||  |   || ||  |||||  ||| |||   | |||  ||
----------------------------------------------------------------------ATGTCAAAGACATTGGAAAGGCTTGACCCgtgagtgcatttcatgcagcatctctctgctatgtgattcattataaggtgttacaggaaatgactttatctttgttgcttctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18163508|gb|BM333347.1|BM333347
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18173129|gb|BM348517.1|BM348517
EST:     ATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: ATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18164000|gb|BM333839.1|BM333839
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18167113|gb|BM336952.1|BM336952
EST:     AATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: AATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|17932024|gb|BM268984.1|BM268984
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18176508|gb|BM351441.1|BM351441
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18168815|gb|BM338655.1|BM338655
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18161892|gb|BM331731.1|BM331731
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18168234|gb|BM338074.1|BM338074
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|148963283|gb|EE014273.2|EE014273
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|17931731|gb|BM268691.1|BM268691
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|16926595|gb|BM079663.1|BM079663
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18173140|gb|BM348528.1|BM348528
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|16378806|gb|BI992621.1|BI992621
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|37391749|gb|CF633118.1|CF633118
EST:     TATGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCGCACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18649161|gb|BM497980.1|BM497980
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCGCACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|148973350|gb|EE024440.2|EE024440
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|7135836|gb|AW498291.1|AW498291
EST:     GAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCGCACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: GAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|17930017|gb|BM266977.1|BM266977
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18181378|gb|BM382588.1|BM382588
EST:     ACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: ACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18167604|gb|BM337444.1|BM337444
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18649160|gb|BM497979.1|BM497979
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCGCACACATATGTCCTGGAGACCNAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18174175|gb|BM349563.1|BM349563
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18174386|gb|BM349774.1|BM349774
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18162934|gb|BM332773.1|BM332773
EST:     ATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: ATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|22819811|gb|BU499901.1|BU499901
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCGCACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18172051|gb|BM347439.1|BM347439
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|17930674|gb|BM267634.1|BM267634
EST:     GCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: GCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|78081514|gb|DV509926.1|DV509926
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|50331163|gb|CO526289.1|CO526289
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|5108408|gb|AI740121.1|AI740121
EST:     TGGAGAGAAATCGAAGCCATTGGAAAGGCTTGACCC                         TGGTGCCCCTGCTTCGCACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|60400336|gb|DN233143.1|DN233143
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18171772|gb|BM341612.1|BM341612
EST:     AGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: AGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|78081882|gb|DV510294.1|DV510294
EST:     TGAGCTTGTCACTGGAGAGAAATTGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|89249775|gb|DY621561.1|DY621561
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18172256|gb|BM347644.1|BM347644
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18172871|gb|BM348259.1|BM348259
EST:     GAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: GAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|31357834|gb|CD442191.1|CD442191
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCGCACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|28985718|gb|CB350781.1|CB350781
EST:     TTTGAGCTTGTCACTGGAAAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|110524573|gb|EE028757.1|EE028757
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18168659|gb|BM338499.1|BM338499
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18163404|gb|BM333243.1|BM333243
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacattttgtaatgcatatcactgctttacatgttcatgtacagtaaagttaatgattaccttgactctttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA