1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCAGTACGAGCGCCCCGTCGCGGCCGTGCCCAACTCCCCGCCGCAGCCGCCTGGCTACTCCAGGCCCGAGGAGAGGCCGAGAAGCAGCACACCTTCCGAGgtaacaactaagagcatctccaacaaatctcaaaattatttattccaatacatgagcattgggagccccctaagatttaaattcctgaaaaaagtgtcaa...
species | Zea mays |
transcript | GRMZM2G066440_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGGCTACTCCAGGCCCGAGGAGAGGCCGAGAAGCAGCACACCTTCCGAG CGGAGCTCGGAAACCACGGTGAGCCGCCCGCAGTATGCACCTCTCTCGGATEST: gi|78122609|gb|DV540993.1|DV540993
genomic: CTGGCTACTCCAGGCCCGAGGAGAGGCCGAGAAGCAGCACACCTTCCGAGgtaacaacta ... ggtatttcagCGGAGCTCGGAAACCACGGTGAGCCGCCCGCAGTATGCACCTCTCTCGGAT
EST: CTGGCTACTCCAGGCCCGAGGAGAGGCCGAAAAGCAGCACACCTTCCGAG CGGAGCTCGGAAACCACGGTGAGCCGCCCGCAGTATGCACCTCTCTCGGATEST: gi|149072975|gb|EE161236.2|EE161236
genomic: CTGGCTACTCCAGGCCCGAGGAGAGGCCGAGAAGCAGCACACCTTCCGAGgtaacaacta ... ggtatttcagCGGAGCTCGGAAACCACGGTGAGCCGCCCGCAGTATGCACCTCTCTCGGAT
EST: CTGGCTACTCCAGGCCCGAGGAGAGGCCGAGAAGCAGCACACCTTCCGAG CGGAGCTCGGAAACCACGGTGAGCCGCCCGCAGTATGCACCTCTCTCGGAT
genomic: CTGGCTACTCCAGGCCCGAGGAGAGGCCGAGAAGCAGCACACCTTCCGAGgtaacaacta ... ggtatttcagCGGAGCTCGGAAACCACGGTGAGCCGCCCGCAGTATGCACCTCTCTCGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGTACGAGCGCCCCGTCGCGGCCGTGCCCAACTCCCCGCCGCAGCCGCCTGGCTACTCCAGGCCCGAGGAGAGGCCGAGAAGCAGCACACCTTCCGAGgtaacaactaagagcatctccaacaaatctcaaaattatttattccaatacatgagcattgggagccccctaagatttaaattcctgaaaaaagtgtcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaag