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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGGAGATCGGCGTCGGCTCGCCGCAGCAGAAGTTCACCGTCATCTTCGACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctggttcctccccttgcctggccgaggttttcctttttcaggacttggatgtgttttgcgctaacactggagtgtgcttttgtgctgatgtgatgcag

Basic information

species Zea mays
transcript GRMZM2G065757_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G065757_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g49200.2 (Oryza sativa), 5'ss of exon 1
TGGGGAGATCGGCGTCGGCTCGCCGCAGCAGAAGTTCACCGTCATCTTCGACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctggttcctccccttgcctggccgaggttttcctttt--tcaggacttggatgtgttttgcgctaacactggagtgtgcttttgtgctgatg--tgatgcag
 |||||||| ||||||||| | |||| |||||| |||||||||||||||||||| ||||| ||||||||||||||||||||  |||||||||||||||||||| ||||  ||||    |  ||       |   || |||      ||  |    |  || |   || |||||   |||| | |  |||  |  ||  |  ||||||||
CGGGGAGATTGGCGTCGGCACTCCGCCGCAGAAATTCACCGTCATCTTCGACACTGGCAGCTCCAACCTCTGGGTGCCGTCGGCCAAGTGCTACTTCTCGgtgagtccctgttcgatgcactggtcaaggggaattctcccaagagtcttgttgcgattgcgacctgtgctaatggtggatttttttttccttgtggcgattgatgcag

upper sequence: GRMZM2G065757_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S93_73V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGGGAGATCGGCGTCGGCTCGCCGCAGCAGAAGTTCACCGTCATCTTCGACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctggttcctccccttgcctggccgaggttttcctttttcaggacttgg-atgtgttttgcgctaacactgg-agtgtgcttttgt-gctgatgtgatgcag
 || ||||||||  | || ||||| |  |||   ||| | ||||||||||||||||| || ||||| |||||||| |||||  ||||||||||||| |||||||||           || | |  |||       || |    |||||    |||    |  ||   ||      | |  ||  |     || ||||||    ||   
CGGAGAGATCGGAATAGGGTCGCCTCCCCAGCCCTTCGCTGTCATCTTCGACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtt-------tctccttgggatggttattaattcctgggttcagttggtggcgcatcattcatgccgctgtttgtggtcagaaaccgtagctgatcatgtgtc-

upper sequence: GRMZM2G065757_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S113_31V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGGGAGATCGGCGTCGGCTCGCCGCAGCAGAAGTTCACCGTCATCTTCGACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctggttcctccccttgcctggccgaggttttcctttttcaggacttggatgtgttttgcgctaacactggagtgtgcttttgtgctgatgtgatgcag-
 || ||||||||| | || ||||| |  |||   ||  ||||||| || |||||||| || |||||||||||||| || ||  ||||||||||||| |||||||||     |   |    |||  | |    |||| ||    ||  |||||  | |   ||  |  |||    |||  |  |  | |   |    |  | |  | 
CGGAGAGATCGGCATTGGGTCGCCTCCTCAGCCTTTTTCCGTCATTTTTGACACCGGGAGCTCCAACCTCTGGGTCCCCTCTGCCAAGTGCTACTTGTCGgtgcgtttc--taattgtggttgttttgt--gggttgtctcgatt--ggactgagctactttaggtactagttgtggctttcgtgtgtaatcctgggaaagggggt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31440937|gb|CD510368.1|CD510368
EST:     ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCG                         ATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
genomic: ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctg ... tgtgatgcagATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
EST: gi|29576941|gb|CB617053.1|CB617053
EST:     ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCG                         ATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
genomic: ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctg ... tgtgatgcagATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
EST: gi|149095835|gb|EE181486.2|EE181486
EST:     ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCG                         ATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
genomic: ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctg ... tgtgatgcagATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
EST: gi|149078470|gb|EE167250.2|EE167250
EST:     ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCG                         ATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
genomic: ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctg ... tgtgatgcagATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
EST: gi|32830382|gb|CD970060.1|CD970060
EST:     ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCG                         ATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
genomic: ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctg ... tgtgatgcagATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
EST: gi|32840007|gb|CD979688.1|CD979688
EST:     ACACCGGCAGGTCCAACCTCTGGGTGCCGGCCTCCAAGTGCTACTTCTCG                         ATCGCTTGCTACTTCCACTCGCGCTACAAGGCAGGGCAGTCAAGCACTTAC
genomic: ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctg ... tgtgatgcagATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
EST: gi|32850768|gb|CD990449.1|CD990449
EST:     ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCG                         ATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
genomic: ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctg ... tgtgatgcagATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
EST: gi|211063419|gb|FL406486.1|FL406486
EST:     ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCG                         ATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
genomic: ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctg ... tgtgatgcagATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
EST: gi|211314123|gb|FL216094.1|FL216094
EST:     ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCG                         ATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
genomic: ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctg ... tgtgatgcagATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
EST: gi|50338072|gb|CO533198.1|CO533198
EST:     ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCG                         ATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
genomic: ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctg ... tgtgatgcagATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
EST: gi|32839505|gb|CD979186.1|CD979186
EST:     ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCG                         ATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
genomic: ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctg ... tgtgatgcagATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
EST: gi|211514658|gb|FK981816.1|FK981816
EST:     GGGTGCCGTCCTCCAAGTGCTACTTCTCG                         ATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
genomic: GGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctg ... tgtgatgcagATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
EST: gi|32839962|gb|CD979643.1|CD979643
EST:     ACACCGGCAGGTCCAACCTCTGGGTGCCGGCCTCCAAGTGCTACTTCTCG                         ATCGCTTGCTACTTCCACTCGCGCTACAAGGCAGGGCAGTCAAGCACTTAC
genomic: ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctg ... tgtgatgcagATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
EST: gi|32839693|gb|CD979374.1|CD979374
EST:     ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCG                         ATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
genomic: ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctg ... tgtgatgcagATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
EST: gi|148956524|gb|EC902364.2|EC902364
EST:     ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCG                         ATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
genomic: ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctg ... tgtgatgcagATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
EST: gi|211092714|gb|FK945554.1|FK945554
EST:     ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCG                         ATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
genomic: ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctg ... tgtgatgcagATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
EST: gi|211312095|gb|FL216082.1|FL216082
EST:     ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCG                         ATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
genomic: ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctg ... tgtgatgcagATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
EST: gi|148931369|gb|EC874278.2|EC874278
EST:     ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCG                         ATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
genomic: ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctg ... tgtgatgcagATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
EST: gi|33099258|gb|CF059218.1|CF059218
EST:     ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCG                         ATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
genomic: ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctg ... tgtgatgcagATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
EST: gi|211314127|gb|FL216098.1|FL216098
EST:     ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCG                         ATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC
genomic: ACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTCGgtgcgtcctg ... tgtgatgcagATCGCTTGCTACTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTAC