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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCACCTCGTGTCCCTCGTTGGCCACTGCATCGCCGGCGCGCGCCGCGTGCTCGTCTACCAGTTCGTGCCCAACAAGACCCTCGAGTTCCACCTCCACGgtcagtgacatctacatcaggctctggcctggccaaaggccgtggcgcccgtggcttgacgcacgtttccgtgtttgggtggtttgcacgcag

Basic information

species Zea mays
transcript GRMZM2G065214_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G065214_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g56470.1 (Oryza sativa), 5'ss of exon 1
CGCCACCTCGTGTCCCTCGTTGGCCACTGCATCGCCGGCGCGCGCCGCGTGCTCGTCTACCAGTTCGTGCCCAACAAGACCCTCGAGTTCCACCTCCACGgtcagtgacatctacatcaggctctggcctggccaaaggccg-tggcgcccgtggcttgacgcacgtttccg---tgtttgggtggtttgcacgcag
||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||| ||||||| ||   |  ||||  |||| || |  |        | || | |||    || | |||| | |   |     |     |  | |     |||
CGCCACCTCGTCTCCCTCGTCGGCTACTGCATCGCCGGCGCGCGCCGCGTGCTCGTCTACGAGTTCGTCCCAAACAAGACCCTCGAGTTCCACCTCCATGgtcagtcac---tcgatca--ctctagcttaccacgccattgctgcctccctcacctcgccgcaagatcaagaaacatccaattcttgttggttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148990247|gb|EE031893.2|EE031893
EST:     GCTCGTCTACCAGTTCGTGCCCAACAAGACCCTCGAGTTCCACCTCCACG                         GAAAAGGGCAGCCGGTGATGGAGTGGTCGACGAGGCTGCGCATTGCGCTCG
genomic: GCTCGTCTACCAGTTCGTGCCCAACAAGACCCTCGAGTTCCACCTCCACGgtcagtgaca ... ttgcacgcagGAAAAGGGCAGCCGGTGATGGAGTGGTCGACGAGGCTGCGCATTGCGCTCG
EST: gi|149112996|gb|EE191482.2|EE191482
EST:     GCTCGTCTACCAGTTCGTGCCCAACAAGACCCTCGAGTTCCACCTCCACG                         GAAAAGGGCAGCCGGTGATGGAGTGGTCGACGAGGCTGCGCATTGCGCTCG
genomic: GCTCGTCTACCAGTTCGTGCCCAACAAGACCCTCGAGTTCCACCTCCACGgtcagtgaca ... ttgcacgcagGAAAAGGGCAGCCGGTGATGGAGTGGTCGACGAGGCTGCGCATTGCGCTCG