Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|50328477|gb|CO523603.1|CO523603EST: GAGTCATAGCTATAATAATTGTTAAG ATTGTGAACCCACACAACAAGGACATTCGGGACATCCCTGGCTTGGCACCA
genomic: GAGTCATAGCTATAATAATTGTTAAGgtgagtgctt ... attttgccagATTGTGAACCCACACAACAAGGACATTCGCGACATCCCTGGCTTGGCACCA
EST:
gi|6194885|gb|AW146989.1|AW146989EST: CCATGCTTTTTCTCATTGTTGCTGGAGTCATAGCTATAATAATTGTTAAG ATTGTGAACCCACACAACAAGGACATTCGCGACATCCCTGGCTTGGCACCA
genomic: CCATGCTTTTTCTCATTGTTGCTGGAGTCATAGCTATAATAATTGTTAAGgtgagtgctt ... attttgccagATTGTGAACCCACACAACAAGGACATTCGCGACATCCCTGGCTTGGCACCA
EST:
gi|211034172|gb|FL478448.1|FL478448EST: CCATGCTTTTTCTCATTGTTGCCGGAGTCATAGCTATAATAATTGTTAAG ATTGTGAACCCACACAAACAAGGACATTCGCGACATCCCTGGCTTGGCACC
genomic: CCATGCTTTTTCTCATTGTTGCTGGAGTCATAGCTATAATAATTGTTAAGgtgagtgctt ... attttgccagATTGTGAACCCACAC-AACAAGGACATTCGCGACATCCCTGGCTTGGCACC
EST:
gi|149113113|gb|EE295877.2|EE295877EST: TTTTT-TCATTGTTGCGGGAGTCATAGCTATAATAATTGTTAAG ATTGGGAACCCACACAACAAGGACATTCGCGACATCCCTGGCTTGGCACCA
genomic: TTTTTCTCATTGTTGCTGGAGTCATAGCTATAATAATTGTTAAGgtgagtgctt ... attttgccagATTGTGAACCCACACAACAAGGACATTCGCGACATCCCTGGCTTGGCACCA
EST:
gi|5005565|gb|AI711627.1|AI711627EST: CCATGCTTTTTCTCATTGTTGCTGGAGTCATAGCTATAATAATTGTTAAG ATTGTGAACCCACACAACAAGGACATTCGCGACATCCCTGGCTTGGCCCCA
genomic: CCATGCTTTTTCTCATTGTTGCTGGAGTCATAGCTATAATAATTGTTAAGgtgagtgctt ... attttgccagATTGTGAACCCACACAACAAGGACATTCGCGACATCCCTGGCTTGGCACCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCTATTATCAATTTTTTTAAATAGGTTGCAACTGATCGATGCATCATGGCCATGCTTTTTCTCATTGTTGCTGGAGTCATAGCTATAATAATTGTTAAGgtgagtgcttaccttcttcagatattttctttcacaactactattacttaggcgtatatcatccatgatctatccaattttgtgttgtgattcagttaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA