Sequence
atgc intronic sequence ATGC exonic sequenceACCAAGGCATCTACAGCAGATTGACATGGTGGGAGCAAATTGACAATGGTCAGCAGCTTACTCGGAACAGGAAGTTTTTAACTGTGGTACCTGTGGTGCTgtaagttccatctcatcctcttgcagttcacacatgaacaaattactctttagattctggaaaggaaattaatactaatcagtacaggcagtggttgttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G064898_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g26940.1 (Oryza sativa), 5'ss of exon 2
ACCAAGGCATCTACAGCAGATTGACATGGTGGGAGCAAATTGACAATGGTCAGCAGCTTACTCGGAACAGGAAGTTTTTAACTGTGGTACCTGTGGTGCTgtaagttccatctc-atcctcttgcagttcaca-catgaacaaattactctttagattctggaaaggaaattaatactaatcagtacag--gcagtggttgttt
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ACCAAGGCATCTACAACAGACTAACTTGGTGGGAACAAATTGATAACGGGCAGCAACTTACTCGTAATAGGAAGTTCTTGACTGTGGTACCTGTGGTGCTgtaagttccatttccatttcaacctaatgtacttcatcatgggattttgttgtag-ttgtagaaag-aactcaaaatgtataattgttgttacaataagtat--
upper sequence: GRMZM2G064898_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA16G01830.1 (Glycine max), 5'ss of exon 2
ACCAAGGCATCTACAGCAGATTGACATGGTGGGAGCAAATTGACAATGGTCAGCAGCTTACTCGGAACAGGAAGTTTTTAACTGTGGTACCTGTGGTGCTgtaagttccatctcatcctcttgcagttcacacatgaacaaattactctttagattctggaaaggaaattaa---tactaatcagtacaggcagtggttgttt-
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ACCAAGGGATCTACAATAGATTGACTTGGTGGGAGCAGGTAGACAATGGAAAGCAGCTTACTCGTAACAGGAAGTTTCTCACAGTTGTTCCTTTGGTGCTgtaagttc--tctaatttgcttgccat-catgtttatatacaaaggtatct-gcttctggtgatgtcatagggtctatgaatgtgtgtgcacccttgttatata
upper sequence: GRMZM2G064898_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA16G02540.1 (Glycine max), 5'ss of exon 2
ACCAAGGCATCTACAGCAGATTGACATGGTGGGAGCAAATTGACAATGGTCAGCAGCTTACTCGGAACAGGAAGTTTTTAACTGTGGTACCTGTGGTGCTgtaagttccatctcatcctcttgcagtt-cacacatgaacaaattactctttagattctggaaaggaaattaa---tactaatcagtacaggcagtggttgttt-
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ACCAAGGGATCTACAATAGATTGACTTGGTGGGAGCAGGTAGACAATGGAAAGCAGCTTACTCGGAACAGGAAGTTTCTCACAGTTGTTCCTTTGGTGCTgtaagttc--tctaatttacttgccatcatttttatatacaaagttatct---gcttctggtgatgtcatagggtctataaatgtgtgtgcacccttgttatata
upper sequence: GRMZM2G064898_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA07G05940.1 (Glycine max), 5'ss of exon 2
ACCAAGGCATCTACAGCAGATTGACATGGTGGGAGCAAATTGACAATGGTCAGCAGCTTACTCGGAACAGGAAGTTTTTAACTGTGGTACCTGTGGTGCTgtaagttccatctcatcctcttgcagttcacacatgaacaaattactctttagattctggaaaggaaattaatacta-atcagtacaggca-gtggttgttt--
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ACCAAGGGATCTACAATAGATTGACTTGGTGGGAGCAGGTAGACAATGGAAAGCAGCTTACTCGTAACAGGAAGTTTCTCACAGTTGTTCCTTTGGTGCTgtaagttc--tctaatttgcatgccat-catttttatatacaaaggtatct-gcttctagtgatgtcatagagtctatgaaagtgtgcgtgtgtgcgtgcaccc
upper sequence: GRMZM2G064898_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv15s0046g00140.t01 (Vitis vinifera), 5'ss of exon 2
ACCAAGGCATCTACAGCAGATTGACATGGTGGGAGCAAATTGACAATGGTCAGCAGCTTACTCGGAACAGGAAGTTTTTAACTGTGGTACCTGTGGTGCTgtaagttccatctcatcctcttg--cagttcacacatgaacaaattactctttagattctggaaaggaaattaatactaatcagtacaggcagtggttgttt
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ACCAGGGAATCTACAATAGGTTGACGTGGTGGGAGCAGATAGACAATGGAAAGCAGCTCACACGCAATAGGAAATTCCTAACTGTTGTACCAGTGGTGCTgtaagtgtcctcctacaacattggtcatttcacttgtataaatatgaatatcatacaaccattttgacattcattagttat--atttttgcattaaccttttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14243683|gb|BG841365.2|BG841365EST: CAGCAGCTTACTCGGAACAGGAAGTTTTTAACTGTGGTACCTGTGGTGCT AGTGACATACATTCTAAGGCGCCTTCTTACAGGTATCTTATTGCGTCGCAC
genomic: CAGCAGCTTACTCGGAACAGGAAGTTTTTAACTGTGGTACCTGTGGTGCTgtaagttcca ... tgccatatagAGTGACATACATTCTAAGGCGCCTTCTTACAGGTATCTTATTGCGTCGCAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACCAAGGCATCTACAGCAGATTGACATGGTGGGAGCAAATTGACAATGGTCAGCAGCTTACTCGGAACAGGAAGTTTTTAACTGTGGTACCTGTGGTGCTgtaagttccatctcatcctcttgcagttcacacatgaacaaattactctttagattctggaaaggaaattaatactaatcagtacaggcagtggttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT