Sequence
atgc intronic sequence ATGC exonic sequenceGGGAGATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgcccagcgctcccagattggcactttgccctcccattttcaagtattgcgtgggatttattcgtgctattttggaggctgggactgatggattagggtttgtcgattgtttgggtctgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G064695_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g40830.1 (Oryza sativa), 5'ss of exon 1
-------------------------------------------------GGGAGATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgccc----agcgctc----ccagattg-gcactttgccctcccattttc-----aagtattgcgtgggatttattcgtgctat---tttggaggctgggactgatggattagggtttgtcgattgtttgggt-ctgcag
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GGTTCGCGGATCGCTCGGGAAGCTGGCCTCGCGCGCCCTCTCCGTCGCCGGGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgcaaccccctccaccagatcccgcagattcccgcaccatattccgttcgatttttgcgggtttttttttggagtcttcgatttaggggcctgggctaacgcgctagggttcgtggat-gtgtgggtatcgcag
upper sequence: GRMZM2G064695_T04 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA13G18730.1 (Glycine max), 5'ss of exon 1
-------------------------------------------------GGGAGATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgcccagcgctcccagattggcactttgccctcccattttcaagtattgcgtgggatttattcgtgctattttggaggctgggactgatggattagggtttgtcgattgtttgggtctgcag
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GGTGAGGGGATTGCTCAACAAGCTCGTCTCTCGCTCCCTCTCCGTCGCCGGAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctgtctcttc-----tcaccgttagcgatattattacgattcacaaatcaattccaattccaagcttcgcggaatctgttcctt-tcgctatagattcatct-----------------
upper sequence: GRMZM2G064695_T04 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA10G04480.1 (Glycine max), 5'ss of exon 1
-------------------------------------------------GGGAGATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgcccagcgctcccagattggcactttgccctcccattttcaagtattgcgtgggatttattcgtgctattttggaggctgggactgatggattagggt-ttgtcgattgtttgggtctgcag
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GGTGAGAGGATTGCTCAACAAGCTCGTCTCTCGCTCCCTCTCGGTCGCCGGAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctctctctctctctctctcaccgt-tatggatattattacgattcac---aaatcaattc-caattcgctatatactcctctcgctgaatctggatattat-------------------
upper sequence: GRMZM2G064695_T04 (Zea mays), 5'ss of exon 2
lower sequence: AT2G20420.1 (Arabidopsis thaliana), 5'ss of exon 1
-------------------------------------------------GGGAGATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgcc------cagcgctccca---gattggcactttgccctcccattttcaagta-----ttgcgtgggatttat----tcgt--gctattttggaggctggg-actgatggattagggtttgtcg--attgtttgggtctgcag-------------------------------------
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GATGAGGGGATTGGTGAACAAGCTCGTGTCCAGATCTCTCTCCATCTCCGGGAAATGGCAGAACCAACAGCTTCGTCGTCTCAACATCCACGAGTATCAGgttcttcttctcttcatttccatttgatagttgcctagattcgcttttgtcaagtcagaattcgagtacgatctgtgtctttgtctgttgtttctgtgttgatccactgattgatttgtggttgatagaattctctgggtttaggataatgtaaagtttgtattgtgattctgatacaaccag
upper sequence: GRMZM2G064695_T04 (Zea mays), 5'ss of exon 2
lower sequence: Vv07s0005g03790.t01 (Vitis vinifera), 5'ss of exon 1
-------------------------------------------------GGGAGATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgcccagcgctcccagattggcactttgccctcccattttcaagtattgcgtgggatttattcgtgctattttggaggctgggactgatggattagggtttgtcgattgtttgggtctgcag
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GGTGAGAGGATTGGTCAACAAGCTTGTATCTCGCTCTCTCAACGTCGCCGGAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAGgtcccttttctctccttctttttccatctttgttccattttt---catcttgtggtctctgatgttcccttttttgtttc----gttcatgaggtaacataaga-aat---------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67017499|gb|CO446248.1|CO446248EST: GGGAGATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG
genomic: CAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgcccagcg ... gggtctgcagG
EST:
gi|149094704|gb|EE180255.2|EE180255EST: GGGAGATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG
genomic: CAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgcccagcg ... gggtctgcagG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGAGATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgcccagcgctcccagattggcactttgccctcccattttcaagtattgcgtgggatttattcgtgctattttggaggctgggactgatggattagggtttgtcgattgtttgggtctgcag
GGAGAT
- GAGATG
- - - - - - - - GCAGCT
- - - - - - - - - CAGCTC