Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCCTGAAGAAGAGGAGTCTGGCGACTCGGAGTCCGACAGCGGGCATGCTGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAGgttagtctttgcaggactatgtgtgtggtggaaacataattgcatgtccacaggtggctagatattgacatgataattgtcccag

Basic information

species Zea mays
transcript GRMZM2G064212_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91050792|gb|EB161210.1|EB161210
EST:     TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAG                         GCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
genomic: TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAGgttagtcttt ... attgtcccagGCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
EST: gi|148950021|gb|EC895550.2|EC895550
EST:     TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAG                         GCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
genomic: TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAGgttagtcttt ... attgtcccagGCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
EST: gi|148948139|gb|EC893649.2|EC893649
EST:     TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAGAG                         GCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
genomic: TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAGgttagtcttt ... attgtcccagGCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
EST: gi|93284688|gb|EB676952.1|EB676952
EST:     TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAGAG                         GCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
genomic: TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAGgttagtcttt ... attgtcccagGCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
EST: gi|60341279|gb|DN208252.1|DN208252
EST:     TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAG                         GCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
genomic: TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAGgttagtcttt ... attgtcccagGCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
EST: gi|22490393|gb|BU050316.1|BU050316
EST:     TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAG                         GCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
genomic: TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAGgttagtcttt ... attgtcccagGCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
EST: gi|20300180|gb|BQ163123.1|BQ163123
EST:     TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAG                         GCTTTGATGCAATATCTGATTCCACGCTAACTAGTGATGTGAACTGGGGAT
genomic: TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAGgttagtcttt ... attgtcccagGCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
EST: gi|101392788|gb|EB818325.1|EB818325
EST:     TGCGTTTCTGGGAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAG                         GCTTTGATGCAATATCTGATTCCCAGCTAACTAGTGATGGGAACTGGGGAT
genomic: TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAGgttagtcttt ... attgtcccagGCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
EST: gi|76926912|gb|DV171049.1|DV171049
EST:     TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAG                         GCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
genomic: TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAGgttagtcttt ... attgtcccagGCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
EST: gi|19057951|gb|BM736618.1|BM736618
EST:     TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAG                         GCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
genomic: TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAGgttagtcttt ... attgtcccagGCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
EST: gi|71320082|gb|DR796796.1|DR796796
EST:     TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAG                         GCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
genomic: TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAGgttagtcttt ... attgtcccagGCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
EST: gi|211065965|gb|FK946610.1|FK946610
EST:     TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAG                         GCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
genomic: TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAGgttagtcttt ... attgtcccagGCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
EST: gi|87153634|gb|DY398423.1|DY398423
EST:     TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAG                         GCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
genomic: TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAGgttagtcttt ... attgtcccagGCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
EST: gi|148958416|gb|EC904649.2|EC904649
EST:     TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAG                         GCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
genomic: TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAGgttagtcttt ... attgtcccagGCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
EST: gi|148965028|gb|EE015858.2|EE015858
EST:     TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAG                         GCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
genomic: TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAGgttagtcttt ... attgtcccagGCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
EST: gi|14244146|gb|BG842173.2|BG842173
EST:     TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAG                         GCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT
genomic: TGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAGgttagtcttt ... attgtcccagGCTTTGATGCAATATCTGATTCCAAGCTAACTAGTGATGTGAACTGGGGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGCCTGAAGAAGAGGAGTCTGGCGACTCGGAGTCCGACAGCGGGCATGCTGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAGgttagtctttgcaggactatgtgtgtggtggaaacataattgcatgtccacaggtggctagatattgacatgataattgtcccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA