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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtccgtgtagcggtggcgctttgtcttcgtgtctgtgtgtatgtatgctgcttcaccggttgtgggggttgtcgtgctgatattttttccccgtgctgctcgtgttgccag

Basic information

species Zea mays
transcript GRMZM2G063851_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063851_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 2
----GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtccg-tgtagcggtggcgctttgtcttcgtgtctgtgtgtatgtatgctgcttcaccggttgtgggggttgtcgtgctgatattttttccccgtgctgctcgtgttgccag
     |||  || |||||| | |||||||||||||||||||   ||||||| ||||| || ||||| || ||||| ||| |||||||   |||    |   |   ||   || |||     |  || || || ||||     | |    ||||  |     | ||| ||  |                             
CAGCTTGCCCTG-TAGCCGCGTGCTCCGGCCATGGCGTTCTTCAGGGGCCTGACCGCGGTGTCGAGGCTTCGATCCCGCGTGgtgagccatccaacatcttgcatgcctattttctggcgatgcgtttgcatttatgtgcgctgaaaaattgttcgttgctttgtgttgtcag----------------------------

upper sequence: GRMZM2G063851_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g10070.2 (Oryza sativa), 5'ss of exon 2
-GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtccg-tgtagcggtggcgctttgtcttcgtgtctgtgtgtatgtatgctgcttcaccggttgtgggggttgtcgtgctgatattttttccccgtgctgctcgtgttgccag
  |||  || |||||| | |||||||||||||||||||   ||||||| ||||| || ||||| || ||||| ||| |||||||   |||    |   |   ||   || |||     |  || || || ||||     | |    ||||  |     | ||| ||  |                             
CTTGCCCTG-TAGCCGCGTGCTCCGGCCATGGCGTTCTTCAGGGGCCTGACCGCGGTGTCGAGGCTTCGATCCCGCGTGgtgagccatccaacatcttgcatgcctattttctggcgatgcgtttgcatttatgtgcgctgaaaaattgttcgttgctttgtgttgtcag----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51592469|gb|CV071615.1|CV071615
EST:     GCCTCACCGCAGTCTCGAGACTGCGATCACGCATG                         GCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
genomic: GCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
EST: gi|78109451|gb|DV527867.1|DV527867
EST:     TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATG                         GCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
genomic: TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
EST: gi|74035022|gb|DT535512.1|DT535512
EST:     TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATG                         GCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
genomic: TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC