Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtccgtgtagcggtggcgctttgtcttcgtgtctgtgtgtatgtatgctgcttcaccggttgtgggggttgtcgtgctgatattttttccccgtgctgctcgtgttgccag

Basic information

species Zea mays
transcript GRMZM2G063851_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063851_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 2
----GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtccg-tgtagcggtggcgctttgtcttcgtgtctgtgtgtatgtatgctgcttcaccggttgtgggggttgtcgtgctgatattttttccccgtgctgctcgtgttgccag
     |||  || |||||| | |||||||||||||||||||   ||||||| ||||| || ||||| || ||||| ||| |||||||   |||    |   |   ||   || |||     |  || || || ||||     | |    ||||  |     | ||| ||  |                             
CAGCTTGCCCTG-TAGCCGCGTGCTCCGGCCATGGCGTTCTTCAGGGGCCTGACCGCGGTGTCGAGGCTTCGATCCCGCGTGgtgagccatccaacatcttgcatgcctattttctggcgatgcgtttgcatttatgtgcgctgaaaaattgttcgttgctttgtgttgtcag----------------------------

upper sequence: GRMZM2G063851_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g10070.2 (Oryza sativa), 5'ss of exon 2
-GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtccg-tgtagcggtggcgctttgtcttcgtgtctgtgtgtatgtatgctgcttcaccggttgtgggggttgtcgtgctgatattttttccccgtgctgctcgtgttgccag
  |||  || |||||| | |||||||||||||||||||   ||||||| ||||| || ||||| || ||||| ||| |||||||   |||    |   |   ||   || |||     |  || || || ||||     | |    ||||  |     | ||| ||  |                             
CTTGCCCTG-TAGCCGCGTGCTCCGGCCATGGCGTTCTTCAGGGGCCTGACCGCGGTGTCGAGGCTTCGATCCCGCGTGgtgagccatccaacatcttgcatgcctattttctggcgatgcgtttgcatttatgtgcgctgaaaaattgttcgttgctttgtgttgtcag----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211505526|gb|FL228165.1|FL228165
EST:     GGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTSS-ATTCACGCATG                         GCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAG
genomic: GGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGAT-CACGCATGgtgagtggtc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAG
EST: gi|211507876|gb|FL228171.1|FL228171
EST:     TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATG                         GCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
genomic: TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
EST: gi|211507874|gb|FL228169.1|FL228169
EST:     GGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACT--SANTCACGCATG                         GCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAG
genomic: GGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGA-TCACGCATGgtgagtggtc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAG
EST: gi|211059244|gb|FL131321.1|FL131321
EST:     TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATG                         GCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
genomic: TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
EST: gi|148932412|gb|EC876097.2|EC876097
EST:     TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATG                         GCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
genomic: TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
EST: gi|211507879|gb|FL228174.1|FL228174
EST:     TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATG                         GCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
genomic: TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
EST: gi|93284646|gb|EB676910.1|EB676910
EST:     TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATG                         GCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
genomic: TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
EST: gi|211510249|gb|FL228196.1|FL228196
EST:     TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATG                         GCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
genomic: TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
EST: gi|148974563|gb|EE025351.2|EE025351
EST:     TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATG                         GCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
genomic: TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
EST: gi|211510246|gb|FL228193.1|FL228193
EST:     TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATG                         GCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
genomic: TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
EST: gi|211507880|gb|FL228175.1|FL228175
EST:     TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATG                         GCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
genomic: TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
EST: gi|211507878|gb|FL228173.1|FL228173
EST:     TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATG                         GCGCAAGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
genomic: TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
EST: gi|211510237|gb|FL228184.1|FL228184
EST:     TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATG                         GCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
genomic: TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
EST: gi|211507873|gb|FL228168.1|FL228168
EST:     TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATG                         GCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
genomic: TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
EST: gi|211507884|gb|FL228179.1|FL228179
EST:     TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATG                         GCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
genomic: TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
EST: gi|211507875|gb|FL228170.1|FL228170
EST:     TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACT--SATCACGCATG                         GCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
genomic: TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
EST: gi|211505527|gb|FL228166.1|FL228166
EST:     TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATG                         GCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC
genomic: TGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATGgtgagtggtc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGGGGTGTGAGGTGGCTGCAGATGCAGAGC