1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTCAACCAAGAGCAGCCTCATGATGGTTCCCCTCCTCTGAGAGAAGATGACAAGAATGGGCATTATGTTTTTGCTGTTGGAGATAATCTCACATCTCGCTgtaattatctgccatcagcgtctcttgttgccaatgcaaatctgtttccatggttggttcttattgattcttttctatgcttgcag
species | Zea mays |
transcript | GRMZM2G063792_T05 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAAGAATGGACATTATGTTTTTGCTGTTGGAGATAATCTCACACCTCGCT ATAAGATCAATGCAAAAATGGGAGAAGEST: gi|211186524|gb|FL126419.1|FL126419
genomic: CAAGAATGGGCATTATGTTTTTGCTGTTGGAGATAATCTCACATCTCGCTgtaattatct ... atgcttgcagATAAGATCAATGCAAAAATGGGAGAAG
EST: CAAGAATGGACATTATGTTTTTGCTGTYGGAGATAATCTCACACCTCGCT ATAAGATCAATGCAAATAATGGGAGAAGGTAEST: gi|211186529|gb|FL126424.1|FL126424
genomic: CAAGAATGGGCATTATGTTTTTGCTGTTGGAGATAATCTCACATCTCGCTgtaattatct ... atgcttgcagATAAGATCAATGCAAA-AATGGGAGAAGGTA
EST: CAAGAATGGACATTATGTTTTTGCTGTTGGAGATAATCTCACACCTCGCT ATAAGATCAATGCAAAAATGGGAGAAGEST: gi|18650268|gb|BM499087.1|BM499087
genomic: CAAGAATGGGCATTATGTTTTTGCTGTTGGAGATAATCTCACATCTCGCTgtaattatct ... atgcttgcagATAAGATCAATGCAAAAATGGGAGAAG
EST: CAAGAATGGGCATTATGTTTTTGCTGTTGGAGATAATCTCACATCTCGCT ATAAGATCAATGCAAAAATGGGAGAAGEST: gi|211186533|gb|FL126428.1|FL126428
genomic: CAAGAATGGGCATTATGTTTTTGCTGTTGGAGATAATCTCACATCTCGCTgtaattatct ... atgcttgcagATAAGATCAATGCAAAAATGGGAGAAG
EST: CAAGAATGGACATTATGTTTTTGCTGTTGGAGATAATCTCACACCTCGCT ATAAGATCAATGCAAAAATGGGAGAAGEST: gi|211184126|gb|FL126414.1|FL126414
genomic: CAAGAATGGGCATTATGTTTTTGCTGTTGGAGATAATCTCACATCTCGCTgtaattatct ... atgcttgcagATAAGATCAATGCAAAAATGGGAGAAG
EST: CAAGAATGGGCATTATGTTTTTGCTGTTGGAGATAATCTCACATCTCGCT ATAAGATCAATGCAAAAATGGGAGAAGEST: gi|211186527|gb|FL126422.1|FL126422
genomic: CAAGAATGGGCATTATGTTTTTGCTGTTGGAGATAATCTCACATCTCGCTgtaattatct ... atgcttgcagATAAGATCAATGCAAAAATGGGAGAAG
EST: CAAGAATGGGCATTATGTTTTTGCTGTTGGAGATAATCTCACATCTCGCT ATAAGATCAATGCAAAAATGGGAGAAGEST: gi|211186523|gb|FL126418.1|FL126418
genomic: CAAGAATGGGCATTATGTTTTTGCTGTTGGAGATAATCTCACATCTCGCTgtaattatct ... atgcttgcagATAAGATCAATGCAAAAATGGGAGAAG
EST: CAAGAATGGACATTATGTTTTTGCTGTTGGAGATAATCTCACACCTCGCT ATAAGATCAATGCAAAAATGGGAGAAGEST: gi|211186534|gb|FL126429.1|FL126429
genomic: CAAGAATGGGCATTATGTTTTTGCTGTTGGAGATAATCTCACATCTCGCTgtaattatct ... atgcttgcagATAAGATCAATGCAAAAATGGGAGAAG
EST: CAAGAATGGGCATTATGTTTTTGCTGTTGGAGATAATCTCACATCTCGCT ATAAGATCAATGCAAAAATGGGAGAAGEST: gi|211184127|gb|FL126415.1|FL126415
genomic: CAAGAATGGGCATTATGTTTTTGCTGTTGGAGATAATCTCACATCTCGCTgtaattatct ... atgcttgcagATAAGATCAATGCAAAAATGGGAGAAG
EST: CCAGAATGGGCATTATGTTTTTGCTGTTGGAGATAATCTCACATCTCGCT ATAAGATCAATGCAAAAATGGGAGAAGEST: gi|211186530|gb|FL126425.1|FL126425
genomic: CAAGAATGGGCATTATGTTTTTGCTGTTGGAGATAATCTCACATCTCGCTgtaattatct ... atgcttgcagATAAGATCAATGCAAAAATGGGAGAAG
EST: CAAGAATGGACATTATGTTTTTGCTGTTGGAGATAATCTCACACCTCGCT ATAAGATCAATGCAAAAATGGGAGA
genomic: CAAGAATGGGCATTATGTTTTTGCTGTTGGAGATAATCTCACATCTCGCTgtaattatct ... atgcttgcagATAAGATCAATGCAAAAATGGGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAACCAAGAGCAGCCTCATGATGGTTCCCCTCCTCTGAGAGAAGATGACAAGAATGGGCATTATGTTTTTGCTGTTGGAGATAATCTCACATCTCGCTgtaattatctgccatcagcgtctcttgttgccaatgcaaatctgtttccatggttggttcttattgattcttttctatgcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT