Sequence
atgc intronic sequence ATGC exonic sequenceGATCCTTTTATTGGACTCTTATTTTACTGTTGTCATATTCCATGGGGTAACCATTGCGCAGTGGCGAAATGCTGGCTACCAAGATCAAGAAGGTCACGAGgtaacctgtcaatgcttcacagctttgtgatgttagccaactgaaatgccaaatttgcgcttacacatcattattcaaatacatttttaatattttgctt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G063775_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g28610.1 (Oryza sativa), 5'ss of exon 12
GATCCTTTTATTGGACTCTTATTTTACTGTTGTCATATTCCATGGGGTAACCATTGCGCAGTGGCGAAATGCTGGCTACCAAGATCAAGAAGGTCACGAGgtaa---cctgtcaat----gcttcacagctttgtgatgttagccaactgaaatgccaaatttgcgcttacacatcattattcaaatacatttttaatattttgctt
||| ||||||||||| ||||||||||||||||| || ||||||||| |||| ||||| ||||||||||||||||| |||||||||||| ||| |||||||||| | |||||| ||| | || ||| | | | || || || |||| | || | || | | | | ||||
GATTCTTTTATTGGATTCTTATTTTACTGTTGTTATCTTCCATGGGATAACGATTGCACAGTGGCGAAATGCTGGTTACCAAGATCAACAAGACCACGAGgtaatagcgtgtcaactatggctgtatggcagctcgattcttgtttgcagagattatttatcaaatactacatcttat-agtctgctttagtgagattatt------
upper sequence: GRMZM2G063775_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 12
GATCCTTTTATTGGACTCTTATTTTACTGTTGTCATATTCCATGGGGTAACCATTGCGCAGTGGCGAAATGCTGGCTACCAAGATCAAGAAGGTCACGAGgtaacctgtcaatgcttcacagctttgtgatgttagccaactgaaatgccaaatttgcgcttacacatcattattcaaatacatttttaatattttgctt------
||||||| | ||||||||||||||||||||||| |||| ||||| | ||| ||||| ||||||||||||||||| || || |||| | || ||||||| | | | || | | | |||| | ||| | |||| ||| || || ||| || | ||
GATCCTTCTTTTGGACTCTTATTTTACTGTTGTTGTATTTCATGGTGCAACTATTGCTCAGTGGCGAAATGCTGGATATCAGAATCAGCCTGAACATGAGgtaattttgtatggacatgtagtct---aaactagaccaatagtaatagtgtagccatcattac-ttcaggtatgcagttag--tttagtcccttcgattggaaaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33095318|gb|CF055312.1|CF055312EST: CCATTGCGCAGTGGCGAAATGCTGGCTAACAAGATCAAGAAGGTCACGAG GTTTTTGCTCAGTTGTTAAAAGCTCCACATGAGGGAGCTAATTTAATAATA
genomic: CCATTGCGCAGTGGCGAAATGCTGGCTACCAAGATCAAGAAGGTCACGAGgtaacctgtc ... caatgttcagGTTTTTGCTCAGTTGTTAAAAGCTCCACATGAGGAAGCTAATTTAATAATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATCCTTTTATTGGACTCTTATTTTACTGTTGTCATATTCCATGGGGTAACCATTGCGCAGTGGCGAAATGCTGGCTACCAAGATCAAGAAGGTCACGAGgtaacctgtcaatgcttcacagctttgtgatgttagccaactgaaatgccaaatttgcgcttacacatcattattcaaatacatttttaatattttgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG