Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATCAAAAGATGTCGTCAAGGCACTAAAGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACTgtaagtctgtctgtgacttgtcatttacttttatgtcttacgtgtggtaggctattagtaactgtcaaagacttttttattgttttgtattgtgcttcca...

Basic information

species Zea mays
transcript GRMZM2G062953_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G062953_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g12880.1 (Oryza sativa), 5'ss of exon 2
GCAATCAAAAGATGTCGTCAAGGCACTAAAGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACTgtaagtctgtctgtgacttgtcatttacttttatgtcttacgtgtggtaggctattagtaactgtcaaagacttttttat---tgttttg-tattgtgcttcca-
||||||||||||||| || |||||||| |||||| ||||||| ||||| ||||||||||| ||| ||||||| || ||||| ||| | ||  | ||||  |||    ||||| |  |   |  |  | |  ||  || ||  |  | |  || || | |   ||||||   ||   || |  | 
GCAATCAAAAGATGTTGTTAAGGCACTCAAGAAAAGGATTGGGCACAAAAATCCAAAAGTCCAAATTCTTGCGCTGACTgtgagtttatc-ataactttacatcc-tttttaagagtggtgc-taatgg--tacaagcaatgggaagaatctcttctctgtgtgttttaacatcaagcatatat

upper sequence: GRMZM2G062953_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA14G21410.1 (Glycine max), 5'ss of exon 2
GCAATCAAAAGATGTCGTCAAGGCACTAAAGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACTgtaagtctgtctgtgacttgtcatttacttttatgtcttacgtgtggtaggctattagtaactgtcaaagacttttttattgttttgtat-tgtgcttcca---
|||| |||| ||||| || || |   ||||||| ||||||||    || ||| ||||||| |||||||||||||||||||||||       ||  ||||  ||  |   || | |||    |    |  | | | ||||  |||   ||| | ||||    ||  | || | ||||   |   
GCAAGCAAAGGATGTTGTTAAAGGCATAAAGAAGCGGATTGGAAGTAAAAATTCAAAAGTCCAACTTCTTGCACTAACTgtaagcaaaatagt--cttgcgatacaaccttttttctc-tttaaactctgatgtcagta-ttgttctagattcttttggatttaagcatgtttgctgtaattg

upper sequence: GRMZM2G062953_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA17G26440.2 (Glycine max), 5'ss of exon 2
GCAATCAAAAGATGTCGTCAAGGCACTAAAGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACTgtaagtctgtctgtgacttgtcatttacttttatgtcttacgtgtggtaggctattagtaactgtcaaagacttttttattgttttgtat-tgtgcttcca-----
|||| |||| ||||| || || |   ||||||| ||||||||    || ||| |||||||||||||||||||||||||||||||   |  |||    ||| ||  |   || | |||  | |    |  | | || | |    || ||    ||||| |  ||  | || | |||||| |     
GCAAGCAAAGGATGTTGTTAAAGGTATAAAGAAGCGGATTGGAAGTAAAAATTCAAAAGTTCAACTTCTTGCACTAACTgtaagcaagagtgt----tgtaatacaaccttttttct--cttaaactctgttgttggcattgttctaaattctttttgtatttaagcatgtttgcttcaattgca

upper sequence: GRMZM2G062953_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv04s0008g03720.t01 (Vitis vinifera), 5'ss of exon 2
GCAATCAAAAGATGTCGTCAAGGCACTAAAGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACTgtaagtctgtctgtgacttgtcatttacttttatgtcttacgtgtggtaggctattagtaactgtcaaagactt-ttttattgttttgtattgtgcttcca-
|||| |||| ||||| ||||| |   |||| || || |||||    ||||||||||||||||||||||||||||| || |||||     |    ||||    | |   || |     ||  | || |       |  | | | |||||    | ||||| || | || |    || |  | 
GCAAGCAAAGGATGTGGTCAAAGGCATAAAAAAGCGCATTGGAAGTAAGAATCCAAAAGTTCAACTTCTTGCACTGACGgtaagctctacaaaaacttaatctctttcttgactatgtaaatttgatgaatgggt--tgattttcaaatttctgttttactgctctgcaaatggccttaat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211195280|gb|FK977671.1|FK977671
EST:     AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACT                         CTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTT
genomic: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACTgtaagtctgt ... tatatttcagCTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTT
EST: gi|71759744|gb|DR957681.1|DR957681
EST:     AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACT                         CTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTT
genomic: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACTgtaagtctgt ... tatatttcagCTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTT
EST: gi|149076223|gb|EE164821.2|EE164821
EST:     AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACT                         CTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTT
genomic: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACTgtaagtctgt ... tatatttcagCTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTT
EST: gi|148952868|gb|EC898858.2|EC898858
EST:     AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACT                         CTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTT
genomic: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACTgtaagtctgt ... tatatttcagCTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTT
EST: gi|211192891|gb|FK977670.1|FK977670
EST:     AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACT                         CTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTT
genomic: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACTgtaagtctgt ... tatatttcagCTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTT