Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGCAGAAGATCATGTTTGCCCTCACCTCCATCAAGGGTGTCGGCCACCATTTCTCCAACATCGTCTGCAAAAAGGCCAACATCGACATGAACAAGCAgtgagttatagatggcttttgcaattgctagttggttcatgtagtggaatgagtatgagaggttcatgtagtggaacaagtacgagatgcaaggggcgct...

Basic information

species Zea mays
transcript GRMZM2G062911_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G062911_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv05s0020g03450.t01 (Vitis vinifera), 5'ss of exon 2
GCAAGCAGAAGATCATGTTTGCCCTCACCTCCATCAAGGGTGTCGGCCACCATTTCTCCAACATCGTCTGCAAAAAGGCCAACATCGACATGAACAAGCAgtgagttatagatggcttttgcaattgctagttggttcatgtagtggaat---gagtatgagaggttcatgtagtggaacaagtacgagatgcaaggggcgct
| |||||||||||||||||||||||||| |||||||||||| | || | || |||| |||| ||||||||||| || ||| |  |||||||||||||   || | || |      || |     ||   |  |   |   | | | | ||   |  | |    |  |||  || |   |||  ||||| ||| |         
GGAAGCAGAAGATCATGTTTGCCCTCACTTCCATCAAGGGTATTGGTCGCCGTTTCGCCAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAAAGgtcattttttttcatctctccacgttttaaacttcatatggaactcggatctaggatttagctgaatcagatattcataca--tacgatatgaacatattag-

upper sequence: GRMZM2G062911_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S215_71V6.1 (Physcomitrella patens), 5'ss of exon 2
GCAAGCAGAAGATCATGTTTGCCCTCACCTCCATCAAGGGTGTCGGCCACCATTTCTCCAACATCGTCTGCAAAAAGGCCAACATCGACATGAACAAGCAgtgagttatagatggcttttgcaattgctagttggttcatgtagtggaatgagtatgagaggttcatgtagtggaacaagtacgagatgcaaggggcgct
|    |||||||| ||||||||||| |||||||||||||| ||||| |  | |||  | ||| | || ||||| |||||  || ||||||||| ||||  ||| |  |       | | |  |  |  | |||  | |   |       |   | || | || |  | |   |   | |   |       |   ||    
GGCGTCAGAAGATTATGTTTGCCCTAACCTCCATCAAGGGAGTCGGGCGTCGTTTTGCTAACTTGGTGTGCAAGAAGGCTGACGTCGACATGAGCAAGAGgtgcgcgaatctcttcgtcttgagctctttgtttctcctcttgaaaattttgatgtgtgtgggtactttccagatcctaacgcttagattacatggtatc

upper sequence: GRMZM2G062911_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S72_222V6.2 (Physcomitrella patens), 5'ss of exon 2
GCAAGCAGAAGATCATGTTTGCCCTCACCTCCATCAAGGGTGTCGGCCACCATTTCTCCAACATCGTCTGCAAAAAGGCCAACATCGACATGAACAAGCAgtgagttat---agatggcttttgcaattgctagttggttcatgtagtggaatgagtatgagaggttcatgtagtggaacaagtacgagatgcaaggggcgct
|    |||||||||||||||||||| |||||||| ||||| || || |  | |||  ||||| | || ||||| |||||| |  ||||||||| ||||  ||  || ||      ||  ||||| | ||  ||   |||   | || |   ||   |||       |  | |  | |     || |      ||   | | | 
GACGTCAGAAGATCATGTTTGCCCTGACCTCCATTAAGGGGGTTGGGCGTCGTTTTGCCAACTTGGTTTGCAAGAAGGCCGATGTCGACATGAGCAAGAGgtatgtgatcttgtttgatttttgtattttata-ccggtatttttatttttatttttatttttatatttttttcttgccttcgt-ctctgcccacacgtccc-