1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTAACAATTCTGAACATgtatgtacatcttatgtcagttcaaagtttgctaaaagaaaattgtgttgtattagtggcctatgtcatacttacctctccaactgctgttacag
species | Zea mays |
transcript | GRMZM2G062738_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTAACAATTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATCEST: gi|211089185|gb|FL460533.1|FL460533
genomic: ACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTAACAATTCTGAACATgtatgtacat ... gctgttacagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
EST: ACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTAACAATTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATCEST: gi|211274725|gb|FL132302.1|FL132302
genomic: ACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTAACAATTCTGAACATgtatgtacat ... gctgttacagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
EST: ACTATGTCCAAGCACGGAAAAGGAAGGATAAGGCTAACAATTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTNAAAACAATCAGCGGCATAATEST: gi|32844934|gb|CD984615.1|CD984615
genomic: ACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTAACAATTCTGAACATgtatgtacat ... gctgttacagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTT-AAAACAATCAGCGGCATAAT
EST: ACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTACCAATTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
genomic: ACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTAACAATTCTGAACATgtatgtacat ... gctgttacagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTAACAATTCTGAACATgtatgtacatcttatgtcagttcaaagtttgctaaaagaaaattgtgttgtattagtggcctatgtcatacttacctctccaactgctgttacag
- - - - AAGCAA
- - - - - AGCAAG
- - - - - - AAGGAA
- - - - - - - - - AAGGAA