1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AACCCCCGACTCTCTGGATCCTACCATTGTTGCAAAGCTGAAGGCAGCTGCAGGATTAGCCAACTTGGAAACAAAGAAATACAAATTTGCTGCTCGTAAGgttagtcaccaattcctcttcgatgcttcaattttctggacatgacatactccatacgtcccaaaatagttgccgacttgctgttctcgtttttcgagga...
species | Zea mays |
transcript | GRMZM2G062210_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGGATTAGCCAACTTGGAAACAAAGAAATACAAATTTGCTGCTCGTAAG TTTGTTGAGACAGGAATTGAACTAGGAAACAACTTCTCTGAAGTCATAGCTEST: gi|32797927|gb|CD950163.1|CD950163
genomic: CAGGATTAGCCAACTTGGAAACAAAGAAATACAAATTTGCTGCTCGTAAGgttagtcacc ... ttccctctagTTTGTTGAGACAGGAATTGAACTAGGAAACAACTTCTCTGAAGTCATAGCT
EST: CAGGATTAGCCAACTTGGAAACAAAGAAATACAAATTTGCTGCTCGTAAG TTTGCTGAGACAGGAATTGAACTAGGAAACAACTTCTCTGAAGTCATAGCTEST: gi|22819870|gb|BU499960.1|BU499960
genomic: CAGGATTAGCCAACTTGGAAACAAAGAAATACAAATTTGCTGCTCGTAAGgttagtcacc ... ttccctctagTTTGTTGAGACAGGAATTGAACTAGGAAACAACTTCTCTGAAGTCATAGCT
EST: CAGGATTAGCCAACTTGGAAACAAAGAAATACAAATTTGCTGCTCGTAAG TTTGTTGAGACAGGAATTGAACTAGGAAACAACTTCTCTGAAGTCATAGCTEST: gi|60401180|gb|DN233987.1|DN233987
genomic: CAGGATTAGCCAACTTGGAAACAAAGAAATACAAATTTGCTGCTCGTAAGgttagtcacc ... ttccctctagTTTGTTGAGACAGGAATTGAACTAGGAAACAACTTCTCTGAAGTCATAGCT
EST: CAGGATTAGCCAACTTGGAAACAAAGAAATACAAATTTGCTGCTCGTAAG TTTGTTGAGACAGGAATTGAACTAGGAAACAACTTCTCTGAAGTCATAGCTEST: gi|20811311|gb|BQ295789.1|BQ295789
genomic: CAGGATTAGCCAACTTGGAAACAAAGAAATACAAATTTGCTGCTCGTAAGgttagtcacc ... ttccctctagTTTGTTGAGACAGGAATTGAACTAGGAAACAACTTCTCTGAAGTCATAGCT
EST: CAGGATTAGCCAACTTGGAAACAAAGAAATACAAATTTGCTGCTCGTAAG TTTGTTGAGACAGGAATTGAACTAGGAAACAACTTCTCTGAAGTCATAGCTEST: gi|5847125|gb|AW000204.1|AW000204
genomic: CAGGATTAGCCAACTTGGAAACAAAGAAATACAAATTTGCTGCTCGTAAGgttagtcacc ... ttccctctagTTTGTTGAGACAGGAATTGAACTAGGAAACAACTTCTCTGAAGTCATAGCT
EST: CAGGATTAGCCAACTTGGAAACAAAGAAATACAAATTTGCTGCTCGTAAG TTTGTTGAGACAGGAATTGAACTAGGAAACAACTTCTCTGAAGTCATAGCTEST: gi|71775377|gb|DR973255.1|DR973255
genomic: CAGGATTAGCCAACTTGGAAACAAAGAAATACAAATTTGCTGCTCGTAAGgttagtcacc ... ttccctctagTTTGTTGAGACAGGAATTGAACTAGGAAACAACTTCTCTGAAGTCATAGCT
EST: CAGGATTAGCCAACTTGGAAACAAAGAAATACAAATTTGCTGCTCGTAAG TTTGTTGAGACAGGAATTGAACTAGGAAACAACTTCTCTGAAGTCATAGCTEST: gi|18660332|gb|BM500807.1|BM500807
genomic: CAGGATTAGCCAACTTGGAAACAAAGAAATACAAATTTGCTGCTCGTAAGgttagtcacc ... ttccctctagTTTGTTGAGACAGGAATTGAACTAGGAAACAACTTCTCTGAAGTCATAGCT
EST: TACAAATTTGCTGCTCGTAAG TTTGTTGAGACAGGAATTGAACTAGGAAACAACTTCTCTGAAGTCATAGCT
genomic: TACAAATTTGCTGCTCGTAAGgttagtcacc ... ttccctctagTTTGTTGAGACAGGAATTGAACTAGGAAACAACTTCTCTGAAGTCATAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACCCCCGACTCTCTGGATCCTACCATTGTTGCAAAGCTGAAGGCAGCTGCAGGATTAGCCAACTTGGAAACAAAGAAATACAAATTTGCTGCTCGTAAGgttagtcaccaattcctcttcgatgcttcaattttctggacatgacatactccatacgtcccaaaatagttgccgacttgctgttctcgtttttcgagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaatag