1 5' 3' | 2 5' 3' | 3 5' 3' |
TTTCTCAAAACACAGCCAGGGCCTAGGGAGAACCCAATGCAATGCTTTATCATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaagatatgatgtgcacgttcatttgaaatccactttaagagaatctagcaccttttttcattgttaaataatgcatgatatattctttctta...
species | Zea mays |
transcript | GRMZM2G062154_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGACTTA-GGCGTEST: gi|7216844|gb|AW562966.1|AW562966
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGA-TTAAGGCGT
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGACTTA-GGCGTEST: gi|19436332|gb|BM952742.1|BM952742
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGA-TTAAGGCGT
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGACTTA-GGCGTEST: gi|22490595|gb|BU050518.1|BU050518
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGA-TTAAGGCGT
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGACTT-AGGCGTEST: gi|87152741|gb|DY397530.1|DY397530
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGA-TTAAGGCGT
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGACTT-AGGCGTEST: gi|19272372|gb|BM888628.1|BM888628
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGA-TTAAGGCGT
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGACTTA-GGCGTEST: gi|22490929|gb|BU050852.1|BU050852
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGA-TTAAGGCGT
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGACTT-AGGCGTEST: gi|22491102|gb|BU051025.1|BU051025
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGA-TTAAGGCGT
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGACTT-AGGCGTEST: gi|19058652|gb|BM737319.1|BM737319
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGA-TTAAGGCGT
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGACTT-AGGCGT
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGA-TTAAGGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTCAAAACACAGCCAGGGCCTAGGGAGAACCCAATGCAATGCTTTATCATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaagatatgatgtgcacgttcatttgaaatccactttaagagaatctagcaccttttttcattgttaaataatgcatgatatattctttctta
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