Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGAGGAACTTGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctattttctctgtctcgttcgtttgtgttaccccttctggataagattctgattggtatgtacaatcagtaacaatatgtatctccttgcctgcag

Basic information

species Zea mays
transcript GRMZM2G062076_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G062076_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g01700.1 (Oryza sativa), 5'ss of exon 2
GGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGAGGAACTTGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtac--acct--attttctctgtctcgt-tcgtttgtgttaccccttctggataagattctgattggtatgtacaatcagtaacaatatgtatctccttgcct-gcag-----------------------------------------------------------------
|| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||| | ||||||||||| || ||||| ||||||||||| |||||  || |    | | | ||| |  |   | |     |     |  | |||      |  | |  | | || | |        |  | | |||  || ||| | |                                                                  
GGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCCTATGCTGgtactaactttgggtctttgtgtattatactgctccctcttttgttcatagattgctcgccaaattatttatatattttcctgtgaattttttcttgttcccttgtataattacttgcccattgtatttaaattgatgtgctgaaccacttgaatgcttctttgcccttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9731495|gb|BE510247.1|BE510247
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|60357821|gb|DN224794.1|DN224794
EST:     ACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: ACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|37393026|gb|CF633769.1|CF633769
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|211079007|gb|FL148946.1|FL148946
EST:     TGAGGAACGTGAGCGCAASCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|22542576|gb|BU093014.1|BU093014
EST:     GTAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: G-AGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|211540434|gb|FL210075.1|FL210075
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|149074288|gb|EE162665.2|EE162665
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|28568978|gb|CB280853.1|CB280853
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGGTAAGTCCTATGTCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|211079013|gb|FL148952.1|FL148952
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGGTTCAA
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGGTTCAA
EST: gi|4646735|gb|AI621810.1|AI621810
EST:     AAGGAT-AGTCCTATGCCG                         AAGAAAGAGACCGG-GGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: AAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|40334927|gb|CK368997.1|CK368997
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|8367292|gb|BE050237.1|BE050237
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTGCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|76015323|gb|DT942493.1|DT942493
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|28910213|gb|CB331325.1|CB331325
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|211076275|gb|FL148944.1|FL148944
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|211094642|gb|FL030914.1|FL030914
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|44901479|gb|CK828024.1|CK828024
EST:     GAGGAACGTGAGCGCAAGCACTACTC-TCCNAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: GAGGAACGTGAGCGCAAGCACTACTCTTCC-AAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|148965262|gb|EC906100.2|EC906100
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|37391486|gb|CF632986.1|CF632986
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|28987594|gb|CB351712.1|CB351712
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|60357589|gb|DN224562.1|DN224562
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|27522103|gb|CA989209.1|CA989209
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|71318073|gb|DR795798.1|DR795798
EST:     CAAGGATAAGTCTTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: CAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|211540431|gb|FL210072.1|FL210072
EST:     TGAGGAACGTGAGCGCAA-SACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|9794685|gb|BE552993.1|BE552993
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|60395043|gb|DN227912.1|DN227912
EST:     CCAAGGATAAGTCTTATGCGG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTATTTTTAGAAG
genomic: CCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|211079006|gb|FL148945.1|FL148945
EST:     TGAGGAACGTGAGCGCAA-CACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|211081741|gb|FL148961.1|FL148961
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|19822434|gb|BQ048458.1|BQ048458
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|60346299|gb|DN213272.1|DN213272
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|60397411|gb|DN230227.1|DN230227
EST:     ACGTGAGCGC-AGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: ACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|60352503|gb|DN219476.1|DN219476
EST:     CCAAGGATAAGTCTTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: CCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|60348926|gb|DN215899.1|DN215899
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|28569026|gb|CB280901.1|CB280901
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|211540435|gb|FL210076.1|FL210076
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|19770347|gb|BQ035068.1|BQ035068
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|60357962|gb|DN224935.1|DN224935
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|211540429|gb|FL210070.1|FL210070
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|40334706|gb|CK368776.1|CK368776
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|211079019|gb|FL148958.1|FL148958
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|21891526|gb|BQ744739.1|BQ744739
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|211094641|gb|FL030913.1|FL030913
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|22521454|gb|BU080265.1|BU080265
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|211076273|gb|FL148942.1|FL148942
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAACTCTAGCCWTCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|67015842|gb|CO444591.1|CO444591
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|9742832|gb|BE518980.1|BE518980
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|22546523|gb|BU098834.1|BU098834
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|94479969|gb|EB708927.1|EB708927
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|22520729|gb|BU079540.1|BU079540
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|211079009|gb|FL148948.1|FL148948
EST:     TGAGGAACGTGAGCGCAASSACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|19770098|gb|BQ034819.1|BQ034819
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|6536578|gb|AW224891.1|AW224891
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|60344935|gb|DN211908.1|DN211908
EST:     ACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: ACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|211276946|gb|FL388217.1|FL388217
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|26457681|gb|CA829264.1|CA829264
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|211094644|gb|FL030916.1|FL030916
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|9794824|gb|BE553132.1|BE553132
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|71318075|gb|DR795799.1|DR795799
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|211079014|gb|FL148953.1|FL148953
EST:     TGGGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|24764934|gb|CA400095.1|CA400095
EST:     TCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|148958811|gb|EE010417.2|EE010417
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|211514736|gb|FL212670.1|FL212670
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|211079010|gb|FL148949.1|FL148949
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|14203855|gb|BG837532.1|BG837532
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|60394367|gb|DN227237.1|DN227237
EST:     GGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: GGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|60349874|gb|DN216847.1|DN216847
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
EST: gi|211453654|gb|FL478351.1|FL478351
EST:     TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCG                         AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG
genomic: TGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1033

GGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGAGGAACTTGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1288

GGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGAGGAACTTGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1624

GGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGAGGAACTTGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 927

GGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGAGGAACTTGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCCTATGCCGgtacacctat ... ttgcctgcagAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG