Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAGCAGCCGAAGAGGGCCCCTAAGCTCAATGAAAGGATCCTCTCTTCTCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggcacaactatcctttcttgctcttctaactcctttgtcaaataagcatacactaattgattttggttatacag

Basic information

species Zea mays
transcript GRMZM2G061928_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061928_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g59040.3 (Oryza sativa), 5'ss of exon 2
GCTGAGCAGCCGAAGAGGGCCCCTAAGCTCAATGAAAGGATCCTCTCTTCTCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacg---ttggcacaactatcctttct--tgctcttctaactcctttgtcaaataagcatacactaattgattttggttatacag
|||| |||||| | | | |||||||||||||| || |||||||| || ||  |||| ||||| || |||||||| ||||| |||||||||||||||||||||| |    || |    | |||  |  |  ||     |  ||  |  | |     | ||||   || | | | |||||||  ||||
GCTGGGCAGCCCAGGCGCGCCCCTAAGCTCAACGAGAGGATCCTGTCCTCCTTGTCGAGGAGATCAGTAGCTGCACATCCGTGGCATGATCTTGAGATCGgtatggaactgtctttcccatctctctttatggctcacccacaacactatgtggcatgcatcatctcacttaatttggttcaacag

upper sequence: GRMZM2G061928_T04 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA19G45050.1 (Glycine max), 5'ss of exon 1
GCTGAGCAGCCGAAGAGGGCCCCTAAGCTCAATGAAAGGATCCTCTCTTCTCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggcacaactatcctttcttgctcttctaactcctttg----tcaaataagcataca---ctaattgattttggttatacag
||||   |          |  ||     | ||||||||||| || || ||  |||| ||||| || |||||||||||||| ||||||||||| || || ||||  || ||  |  |||  || |||| || | ||      ||     | |||| |   ||||   ||| || |||||  | || |||
GCTGGAGAAAATCGTCCAGTTCCCCGTTTGAATGAAAGGATTCTTTCATCATTGTCAAGGAGATCAGTAGCTGCTCATCCTTGGCATGATCTAGAAATTGgtaactttgctga--tattattgcttgttcatatagtatagttaagatttaaatcatattacaaaactacttaattttcat-atgcag

upper sequence: GRMZM2G061928_T04 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA07G05390.1 (Glycine max), 5'ss of exon 2
-GCTGAGCAGCCGAAGAGGGCCCCTAAGCTCAATGAAAGGATCCTCTCTTCTCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggcacaactatc--ctttcttg----ctcttctaactcc---tttgtcaaataagcatacactaattgattttggttatacag---------------------------------------------------------------------------------
   || | |  |     ||  |||     | ||||||||||| || || ||| |||| ||||| || || |||||||| || |||||||||||||| || |||||  | |  ||  | |   |||  |||     |  | ||||  |   |   | |||| |   | |  ||     || ||| ||  |                                                                                   
CCTTGCGAAAACCGTCCGGTTCCCCGT-TTAAATGAAAGGATTCTTTCATCTTTGTCTAGGAGATCAGTTGCTGCTCACCCTTGGCATGATCTTGAAATTGgtactcttgttcacttttttgcttcattggcatttactttaacatcgaatgacttaaatcatgttgctatatccccttgtggctaggccaaatatgcttatgccaaaacaaggactagtttggtcttaccccacaaaaaaagttgttaatgttcttaggtttcatgtgcag

upper sequence: GRMZM2G061928_T04 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA16G01960.1 (Glycine max), 5'ss of exon 1
-GCTGAGCAGCCGAAGAGGGCCCCTAAGCTCAATGAAAGGATCCTCTCTTCTCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggca--caactatcctttcttgctcttctaactcctttgtcaaataagcatacactaattgattttggttatacag----------------------------------------------------------------------------------------------
    ||| |  |     ||   ||     | ||||||||||| || || |||||||| ||||| || || |||||||| || |||||||||||||| || ||||   | |      ||||   |   |   |    | | |      |  ||| |    | |  || |   | |  ||||   |                                                                                              
CCTCGAGAAAACCGTCCGG-TTCCACGCTTGAATGAAAGGATTCTTTCATCTCTGTCTAGGAGATCAGTTGCTGCTCACCCTTGGCATGATCTTGAAATTGgtaatcttgttgttgactacgttgcttcattgcatttaatttaacattgaatgacttaaaatcaagttgctata-ttatcttgtggctaggccaaatgcttatgctaaatcaaggattattttggtcttagcctacaaaaaaaaaaagttgttaatgttcttaggtttcatatgcag

upper sequence: GRMZM2G061928_T04 (Zea mays), 5'ss of exon 2
lower sequence: AT4G01480.1 (Arabidopsis thaliana), 5'ss of exon 2
GCTGAGCAGCCGAAGAGGGCCCCTAAGCTCAATGAAAGGATCCTCTCTTCTCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggcacaactatcctttcttgctcttctaactcctttgtcaaataagcatacactaattgattttggttatacag
    |||  | |||     | ||     | || || ||||| ||||| ||| |||| | ||| || || ||||| |||||||||||||||||||| |||||||  |   |||     |  |||   | | ||||   |  ||  | | |      |  ||||| |  || |   | | |||
AAGAAGCTTCAGAACCCTACTCCACGTTTAAACGAGAGGATTCTCTCATCTTTGTCTAAGAGATCGGTTGCTGCACATCCATGGCATGATCTTGAAATCGgta-ataatcac-----tgttttaaagatattctgtgtgtttgattagagtctttttaactaaattgttctatgtgtgcag

upper sequence: GRMZM2G061928_T04 (Zea mays), 5'ss of exon 2
lower sequence: AT1G01050.1 (Arabidopsis thaliana), 5'ss of exon 2
GCTGAG-CAGCCGAAGAGGGCCCCTAAGCTCAATGAAAGGATCCTCTCTTCTCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggca----caactatcct--ttcttgctcttctaactcctttgtcaaataagcatacactaattgattttggttatacag
 | ||| | || |      || |||   || || || ||||| ||||| ||  |||| || || ||||||||||||||||||||||||||||||||||| ||||  |          ||  || ||  || ||| | |  ||  |   |  ||   ||   |  ||  | |     |    |||  ||
-CAGAGGCTGCAGCGACCAGCTCCTCGTCTTAACGAGAGGATTCTCTCATCCTTGTCAAGAAGATCCGTAGCTGCTCATCCATGGCATGATCTTGAGATTGgtatataaatcattctaaacatgctactttttgatttcatacttttgtattctgttactaaatcataagtctggataatctatctag

upper sequence: GRMZM2G061928_T04 (Zea mays), 5'ss of exon 2
lower sequence: Vv02s0025g02980.t01 (Vitis vinifera), 5'ss of exon 1
GCTGAGCAGCCGAAGAGGGCCCCTAAGCTC--AATGAAAGGATCCTCTCTTCTCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggcacaactatcctttc--ttgctc---ttctaactcc--tttgtcaaataagcatacactaattgattttggttatacag
  |  |  ||   | |  |||| |   |    ||||| ||||||||||| ||  |||| ||||| || || ||||||||||| ||||||||||||||||| |||  ||    | ||   |  | |   | | ||   ||  | |  |  ||||  || |||   |      ||   || |   ||| |||
--TACGATGCTTCACAACGCCCATCCTCCTTGAATGAGAGGATCCTCTCATCAATGTCAAGGAGATCGGTTGCTGCTCATCCCTGGCATGATCTTGAGATTGgtgtgtctcgagaatggttatgttcatagttcaaattgcagcctccatttggaaactaacggtttttgtataccttgtatatatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211146691|gb|FK994973.1|FK994973
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211145266|gb|FK994966.1|FK994966
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|31909409|gb|CD650904.1|CD650904
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211146700|gb|FK994982.1|FK994982
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211148123|gb|FK994991.1|FK994991
EST:     CTGTCCAGGAGGTCCGTAGCTGCTCATCACATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: CTGTCCAGGAGGTCCGTAGCTGCTCATC-CATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211149572|gb|FK995003.1|FK995003
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211143831|gb|FK994953.1|FK994953
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211146694|gb|FK994976.1|FK994976
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211149573|gb|FK995004.1|FK995004
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211146702|gb|FK994984.1|FK994984
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211146692|gb|FK994974.1|FK994974
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGATTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211148133|gb|FK995001.1|FK995001
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211145267|gb|FK994967.1|FK994967
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211091461|gb|FK999164.1|FK999164
EST:     TCTGTCCAGGAGGT-CGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211145261|gb|FK994961.1|FK994961
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211146703|gb|FK994985.1|FK994985
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211149571|gb|FK995002.1|FK995002
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211149575|gb|FK995006.1|FK995006
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211145265|gb|FK994965.1|FK994965
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211145262|gb|FK994962.1|FK994962
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211146693|gb|FK994975.1|FK994975
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211148126|gb|FK994994.1|FK994994
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211145258|gb|FK994958.1|FK994958
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|13178120|gb|BG349378.1|BG349378
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|28930839|gb|CB334200.1|CB334200
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211098874|gb|FK999203.1|FK999203
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211145260|gb|FK994960.1|FK994960
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211146695|gb|FK994977.1|FK994977
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211145263|gb|FK994963.1|FK994963
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211091460|gb|FK999163.1|FK999163
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211146701|gb|FK994983.1|FK994983
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|74237956|gb|DT645870.1|DT645870
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211149576|gb|FK995007.1|FK995007
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211146698|gb|FK994980.1|FK994980
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211145259|gb|FK994959.1|FK994959
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCT-TTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211143833|gb|FK994955.1|FK994955
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211093927|gb|FK999180.1|FK999180
EST:     TCTGTCCAGGAGGTCCGTATCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211270190|gb|FL112873.1|FL112873
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211143834|gb|FK994956.1|FK994956
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211143830|gb|FK994952.1|FK994952
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211148120|gb|FK994988.1|FK994988
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211148131|gb|FK994999.1|FK994999
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211149574|gb|FK995005.1|FK995005
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211145269|gb|FK994969.1|FK994969
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211148121|gb|FK994989.1|FK994989
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211143828|gb|FK994950.1|FK994950
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211146699|gb|FK994981.1|FK994981
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|28873717|gb|CB329666.1|CB329666
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211148129|gb|FK994997.1|FK994997
EST:     CTGTCCAGGAGGTCCGTAGCTGCTCAGTCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: CTGTCCAGGAGGTCCGTAGCTGCTCA-TCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211270194|gb|FL112877.1|FL112877
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211148119|gb|FK994987.1|FK994987
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211145264|gb|FK994964.1|FK994964
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211148122|gb|FK994990.1|FK994990
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211148127|gb|FK994995.1|FK994995
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211146697|gb|FK994979.1|FK994979
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211148128|gb|FK994996.1|FK994996
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211145270|gb|FK994970.1|FK994970
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|5325092|gb|AI783283.1|AI783283
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCGTGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211143829|gb|FK994951.1|FK994951
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211146690|gb|FK994972.1|FK994972
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211149578|gb|FK995009.1|FK995009
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211145271|gb|FK994971.1|FK994971
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211149577|gb|FK995008.1|FK995008
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|211148130|gb|FK994998.1|FK994998
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT
EST: gi|31358333|gb|CD442690.1|CD442690
EST:     TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCG                         GTCCTGATGCTCCTGCTGTTTTCAATGTT
genomic: TCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggc ... ggttatacagGTCCTGATGCTCCTGCTGTTTTCAATGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGAGCAGCCGAAGAGGGCCCCTAAGCTCAATGAAAGGATCCTCTCTTCTCTGTCCAGGAGGTCCGTAGCTGCTCATCCATGGCATGATCTTGAGATCGgtacgttggcacaactatcctttcttgctcttctaactcctttgtcaaataagcatacactaattgattttggttatacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC