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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctctatcaaaatcctcaaattttgttgggcctgatccgtgctattgcttcttttgtcctgatgagcacgggctgtttgtggtgcag

Basic information

species Zea mays
transcript GRMZM2G061745_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g56646.1 (Oryza sativa), 5'ss of exon 2
TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctctatcaaaatcctcaaattttgttgggcctgatccgtgctattgcttcttttgtcctgatgagcacgggctgtttgtggtgcag
|||||||||| ||||||||||||||||| |||||||||||||| || || ||||||||||| || ||||| ||||||||||||||||| || |||||||  | |  || || || |  |||||| | ||||  | |||  | || || | |||| |||| ||||      ||||  | ||| ||
TGCCGTTTGAAGAGGATGACAAGGATCCGAGGATCTGGTTCCTCGATCATAATTACCACGAATCGATGTTTTCCATGTTCAAGAGGATCAACGgtatgcagtttgcaagtcttcca--tttgtttgacctgccctgtgtaactgattgtgttgtactgacgagc------tgttcttcgtgtag

upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA18G03360.1 (Glycine max), 5'ss of exon 2
-TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctctatcaaaatcctcaaattttgttgggcctgatccgtgctattgcttcttttgtcctgatgagcacgggctgtt--tgtggtgcag-
 |||| ||||| || ||||||||||||||||| |||||||| ||||||||||||||||| || || ||||| |||||||| || || || |||||||||        ||||  |    |||| |||    |      |  |      ||| |  ||    ||| || ||| | ||  | ||||  |  
GTGCCCTTTGAAGAAGATGACAAGGATCCTAGCATCTGGTTTCTTGACCACAATTACCATGAATCGATGTTTTCCATGTTTAAAAGAATAAATggtatgagtag--gaaattttttccttttcttgtatgtctcttttaattgaatatctctgatctaattgaacatgggtttttcttttggtttaca

upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA11G34980.1 (Glycine max), 5'ss of exon 2
TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctctatcaaaatcctcaaattttgttgggcctgatccgtgctattgcttcttttgtcctgatgagcacgggctgtttgtggtgcag--
|||| ||||| || ||||||||||||||||| |||||||| ||||||||||||||||| || || ||||| |||||||| || || || ||||||| |       ||| |  ||   || |  |  | ||| | |     | |    ||    ||    ||| ||     | ||| ||||  |   
TGCCCTTTGAAGAAGATGACAAGGATCCTAGCATCTGGTTTCTTGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtaggaaaatttttccttttcttgtatgtctgtttcaattgaatatgcctg--atctaattgaacattttttttttttggtttacag

upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 2
lower sequence: AT3G11270.2 (Arabidopsis thaliana), 5'ss of exon 2
TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtat-gctctatcaaaatcctcaaattttgttgggcctgatccgtgctattgcttcttttgtcctgatgagcacgggctgtttgtggtgcag
|||| ||||||||||||||||| ||  | || || ||||| ||||| ||||| ||||||||||| |||||   |||||||||||| ||||||||||| ||||    || ||     |||  |   | |  | ||  |||  |   ||  ||||   |||||   ||     || ||   |     
TGCCTTTTGAGGAGGATGACAAAGACACAAGCATATGGTTTCTTGATCACAACTACCACGAGTCGATGTTTCACATGTTCAAGAGAATTAATGgtattgctcgggaaatat-----aatgcttaagagtat-atatgtggaaagcctcttttttgactgattttcatat-ttgctttcag-----

upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 2
lower sequence: AT5G05780.1 (Arabidopsis thaliana), 5'ss of exon 2
TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctctatcaaaatcctcaaattttgttgggcctgatccgtgctattgcttcttttgtcctgatgagcacgggctgtttgtggtgcag
|||| ||||||||||||||||| || || || |||||||| ||||| ||||| ||||| ||||||||||||  |||||||||||| |||||||||||  | | |||  |  || |     || |    ||| |   ||  ||||      |        | | |||   ||  |||   | |||
TGCCCTTTGAGGAGGATGACAAAGACCCAAGCATCTGGTTTCTTGATCACAACTACCATGAGTCAATGTTCCACATGTTCAAGAGAATTAATGgtat--tttctcaggaaactga-----tgcttatactg-tttatgacattgtagaaatccatgcttttaacactacctacttgcttttcag

upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv02s0025g01490.t01 (Vitis vinifera), 5'ss of exon 2
TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctctatcaaaatcctcaaattttgttgggcctgatccgtgctattgcttcttttgtcctgatgagcacgggctgtttgtggtgcag
|||| ||||| || ||||||||||| || || || || || ||||||||||| |||||||| |||||||| |||||||||||||| || ||||||||  |   |   ||      |  | | ||   |   ||   |        |  |||| |    ||   ||     |||||  |      
TGCCCTTTGAAGAAGATGACAAGGACCCAAGTATATGTTTTCTTGACCACAACTACCACGAATCAATGTTTTCCATGTTCAAGAGAATAAATGgtattattggttgtaagtgatgaggtatcttttac--aatttttatggacaatg-ttttatgggaatttacaataattgtttcag------

upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv08s0007g01980.t01 (Vitis vinifera), 5'ss of exon 2
TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctctatca-aaatcctcaaattttgttgggcctgatccgtgctattgcttcttttgtcctgatgagcacgggctgtttgtggtgcag
|||| ||||| || ||||||||||| || || || ||||| ||||||||||| || || || |||||||| |||||||||||||| || ||||||||  | | ||  ||||  | |  | | |      || |    |  ||| |    |||  |   |      | |   |||||  |      
TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACAACTATCATGAATCAATGTTTTCCATGTTCAAGAGAATAAATGgtattatttttcgtaaatgatgaggtctcg------cttacaatttttatgggcgatttcttatgggaatttatgatttgtttcag------

upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 2
lower sequence: PP1S197_115V6.1 (Physcomitrella patens), 5'ss of exon 2
TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctctatcaaaatcctcaaattttgttgggcctgatccgtgctattgcttcttttgtcctgatgagcacgggctgtttgtggtgcag---------------------------------------------------------------------------------------------------------------------
|||| |||||||| |||||||||||| | || || |||||| | |||||||| || || ||| | ||||||  |||||||||||| ||||| ||||| || ||  |    | ||    |||  |    |||||        |||    | ||    ||| || | | | |||   ||   || |                                                                                                                     
TGCCCTTTGAGGAAGATGACAAGGATGCCAGCATATGGTTCTTGGACCACAACTATCATGAGACTATGTTCGACATGTTCAAGAGAATTAACGgtattct-tacta----cttc----tttcctccaactgattaacttctttgtagttgtttggatgaagaacgcag-ctgcaagtttagcggtgtgttttaaccaatattttctaattttgactggtatgtctcgtaacattttgagtatggcagatttgttaaatctgtttgtggtaaaactgactgttgtaagacgtgtttgctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211110416|gb|FL202645.1|FL202645
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGT-GTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|91048122|gb|EB158540.1|EB158540
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211113175|gb|FL202691.1|FL202691
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAS-ACCTGGCCCAAAACTAAGGGAG
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCAC-TGGCCCAAAACTAAGGGAG
EST: gi|211222278|gb|FL202724.1|FL202724
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|60348273|gb|DN215246.1|DN215246
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|20811186|gb|BQ295664.1|BQ295664
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211113174|gb|FL202690.1|FL202690
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGT
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGT
EST: gi|211222275|gb|FL202721.1|FL202721
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTAC
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTAC
EST: gi|211222279|gb|FL202725.1|FL202725
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211385219|gb|FK956040.1|FK956040
EST:     TTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211220205|gb|FL202707.1|FL202707
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAG
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTT-GTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAG
EST: gi|211220211|gb|FL202713.1|FL202713
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211112251|gb|FL202672.1|FL202672
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAG
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAG
EST: gi|211220206|gb|FL202708.1|FL202708
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTAC
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTAC
EST: gi|149014660|gb|EE044326.2|EE044326
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|5901317|gb|AW042417.1|AW042417
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|61119047|gb|DN560008.1|DN560008
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCCAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|148958380|gb|EC904610.2|EC904610
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211222271|gb|FL202717.1|FL202717
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACMG-ACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211222280|gb|FL202726.1|FL202726
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211112249|gb|FL202670.1|FL202670
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211110420|gb|FL202649.1|FL202649
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211110421|gb|FL202650.1|FL202650
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211110417|gb|FL202646.1|FL202646
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211113176|gb|FL202692.1|FL202692
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211113170|gb|FL202686.1|FL202686
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|31664405|gb|CD573130.1|CD573130
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|148960678|gb|EE011309.2|EE011309
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|149013823|gb|EE043297.2|EE043297
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|78081117|gb|DV509529.1|DV509529
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGGACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|50325946|gb|CO521072.1|CO521072
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211111338|gb|FL202663.1|FL202663
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211220203|gb|FL202705.1|FL202705
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGGCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|76015327|gb|DT942497.1|DT942497
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211220204|gb|FL202706.1|FL202706
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211224334|gb|FL202735.1|FL202735
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|149081616|gb|EE170759.2|EE170759
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|22818902|gb|BU498992.1|BU498992
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|101396014|gb|EB819936.1|EB819936
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211113172|gb|FL202688.1|FL202688
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211112252|gb|FL202673.1|FL202673
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211222270|gb|FL202716.1|FL202716
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211220207|gb|FL202709.1|FL202709
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTG
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTG
EST: gi|44681759|gb|CK786807.1|CK786807
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211111337|gb|FL202662.1|FL202662
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGG
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGG
EST: gi|91055801|gb|EB166219.1|EB166219
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211382594|gb|FK956036.1|FK956036
EST:     TTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|78081122|gb|DV509534.1|DV509534
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|6095435|gb|AW120102.1|AW120102
EST:     GACCACAATTACCACCGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGGTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: GACCACAATTACCAC-GAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|26456947|gb|CA828530.1|CA828530
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211113179|gb|FL202695.1|FL202695
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATG
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATG
EST: gi|211112250|gb|FL202671.1|FL202671
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCC-AASAACTAAGGGAG
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAA-AACTAAGGGAG
EST: gi|211222282|gb|FL202728.1|FL202728
EST:     GACCACAATTACCACGAGTCGATGTTTCTCCATGTTCAAGASGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: GACCACAATTACCACGAGTCAATGTT-CTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|148943844|gb|EC888923.2|EC888923
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211112254|gb|FL202675.1|FL202675
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGT
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGT
EST: gi|211224333|gb|FL202734.1|FL202734
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATG
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATG
EST: gi|148935087|gb|EC879128.2|EC879128
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|108953226|gb|EC364647.1|EC364647
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGG
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGG
EST: gi|211220199|gb|FL202701.1|FL202701
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACMSAACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211111334|gb|FL202659.1|FL202659
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211222276|gb|FL202722.1|FL202722
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGG
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGG
EST: gi|211111335|gb|FL202660.1|FL202660
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGARGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211111333|gb|FL202658.1|FL202658
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACT
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACT
EST: gi|148971131|gb|EE021979.2|EE021979
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211220200|gb|FL202702.1|FL202702
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACMS-ACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211222269|gb|FL202715.1|FL202715
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAKGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211111330|gb|FL202655.1|FL202655
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTAC
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTAC
EST: gi|60350695|gb|DN217668.1|DN217668
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211111344|gb|FL202669.1|FL202669
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211113173|gb|FL202689.1|FL202689
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211111343|gb|FL202668.1|FL202668
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|89756277|gb|DY686359.1|DY686359
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211222272|gb|FL202718.1|FL202718
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACMG-ACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211112256|gb|FL202677.1|FL202677
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|62525906|gb|DN828554.1|DN828554
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAGGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211111339|gb|FL202664.1|FL202664
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211112259|gb|FL202680.1|FL202680
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|149072304|gb|EE160567.2|EE160567
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211112258|gb|FL202679.1|FL202679
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|149107089|gb|EE188981.2|EE188981
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211110425|gb|FL202654.1|FL202654
EST:     TGACCACAATTACCACGAGTCGATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTT
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTT
EST: gi|211112260|gb|FL202681.1|FL202681
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211224329|gb|FL202730.1|FL202730
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: gi|211220198|gb|FL202700.1|FL202700
EST:     TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG                         CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
genomic: TGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 394

TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 256

TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 294

TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 276

TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctcta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATGgtatgctctatcaaaatcctcaaattttgttgggcctgatccgtgctattgcttcttttgtcctgatgagcacgggctgtttgtggtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT