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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGACTACTTGAGATTAAACATGGACTGCTACAAGTTGCAGAGACGTTAGATTTTCTTCATAACAATGCTCATCTTGCCCATCGAGCTATATCGCCTGAGgttagtatgcatcgccattcttctgccttataattttctgcttgttccttttctgttactgatataattgatttgctctgtcattttcctattacaatcc...

Basic information

species Zea mays
transcript GRMZM2G061681_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061681_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g42950.2 (Oryza sativa), 5'ss of exon 2
GGGACTACTTGAGATTAAACATGGACTGCTACAAGTTGCAGAGACGTTAGATTTTCTTCATAACAATGCTCATCTTGCCCATCGAGCTATATCGCCTGAGgttagtatgcatcgccattcttctgccttataattttctgcttgttccttttctgttactgatataattgat--ttgctctgtcattttcctattacaatcc--
||| ||||| ||| ||||||| ||  ||||||||||  |||||||  |||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||   ||||| | | |||||||  | | ||| ||| ||||  |    |||  |||||  ||| |  ||  |  |   ||||| |   |||| || || |    
GGGGCTACTGGAGGTTAAACACGGGTTGCTACAAGTCTCAGAGACACTAGACTTTCTTCATAACAATGCCCATCTTGCCCATCGAGCTATATCACCCGAGgttga-atgcagcac-attcttcaac-tcatagttt-ctgcacgaatgtttcatgttatggatgtgctttgtcataaatctgttagaatcctttttcattttac

upper sequence: GRMZM2G061681_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 2
GGGACTACTTGAGATTAAACATGGACTGCTACAAGTTGCAGAGACGTTAGATTTTCTTCATAACAATGCTCATCTTGCCCATCGAGCTATATCGCCTGAGgttagta----tgcatc-----gccattcttctgccttataattttctgcttgttccttttctgttactgatataattgatttgctctgtcattttcctattacaatcc
|||| |  | ||| | || ||||| ||||| || ||| |||| || || || ||||||||||||||||||| ||||   ||||| |||||||| ||||||||||  |    |||||      |  ||| || | ||| | ||| | |           | | | | | |  |  | | ||||| ||     |     |||||||     
GGGATTGTTGGAGGTGAAGCATGGTCTGCTCCAGGTTTCAGAAACCTTGGAATTTCTTCATAACAATGCTCGTCTTATTCATCGGGCTATATCACCTGAGgttacaaattctgcatttaaaagttattttttt-cctcaaaatatgcaatagccagactgtatataaatt-tgaagtggatttcctaaagaaac--actattac-----