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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATGTTCCAGACAAGGATGTTATTGGGAAGAATGGGTATTTATGATCAGTATCAGGATTGGCGCCTCGATGTCGACAACATGACATATGAGgtaccctcccactgaatagcaatagcacgtagtaaaataaaacagaaaagattttacctcaccatttcatatcgcag

Basic information

species Zea mays
transcript GRMZM2G061663_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061663_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g47670.1 (Oryza sativa), 5'ss of exon 3
---ATGATGTTCCAGACAAGGATGTTATTGGGAAGAATGGGTATTTATGATCAGTATCAGGATTGGCGCCTCGATGTCGACAACATGACATATGAGgtaccctccca--ctgaatagcaatagcacgtagtaaaataa-------------aacagaaaagattttacctcaccatttcatatcgcag--------
   ||||||||    ||| || | |||| ||||||| | |||||  |||||||| | ||||||||||| ||||| || |||||||||||||||||||||||||||||  |  ||||     | | |  |  |||| |              | ||  | | ||| | | ||| |    |||    ||         
ATCATGATGTTAAGAACACGGCTATTATGGGGAAGATTCGGTATGCATGATCAGCACCAGGATTGGCGACTCGACGTTGACAACATGACATATGAGgtaccctcccatgcccaatatgtgcaacccaaaaaaaaaaactttttagtacattaccatcacaaattctccttcatccacccattgttcaatttgatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211481318|gb|FL475453.1|FL475453
EST:     ATGATCAGTATCAGGATTGGCGCCTCGATGTCGMCAACATGACATATGAG                         GAGTTGCTCGATCTTGAGGACCGGATTGGATATGTAAGTACAGGGCTTCGT
genomic: ATGATCAGTATCAGGATTGGCGCCTCGATGTCGACAACATGACATATGAGgtaccctccc ... catatcgcagGAGTTGCTCGATCTTGAGGACCGGATTGGATATGTAAGTACAGGGCTTCGT