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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGTGCTTATACACCAGGGGAAGGTGCTCAAGGACGACACAACATTGGAGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctacttgtttattattctggttgacacatgggcacatgacaaatcacgggtgtatgacttggtatgataataaaattattactgagatatgaata...

Basic information

species Zea mays
transcript GRMZM2G061620_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061620_T05 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g24200.1 (Oryza sativa), 5'ss of exon 2
ACAAGTGCTTATACACCAGGGGAAGGTGCTCAAGGACGACACAACATTGGAGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggc----tacttgtttattattc--tggttgacacatgggcacatgacaaatcacgggtgtatgacttg--gtatgataataaaattattactgagatatgaata
|||  |||| || || |||||||||||||||||||| ||||| |||||||| |||||| ||||  ||||||| |  || |||||||||||||| |||||||| ||      || |||||  | ||   ||| |   || ||| | ||    |||||| |  | |   ||||   |||  |||||  |   | |    || |||     
ACAGATGCTCATTCATCAGGGGAAGGTGCTCAAGGATGACACCACATTGGATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGgtgggtacagcacctgtttgatgttatatggctattacctgg-cgca----aaatcatgaatatcatacttatcgtacaataatccatggaatgtcaaggtattc---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211500818|gb|FL228127.1|FL228127
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|76012358|gb|DT939528.1|DT939528
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|5296098|gb|AI782973.1|AI782973
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|7216451|gb|AW562573.1|AW562573
EST:     GTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: GTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|211500819|gb|FL228128.1|FL228128
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|4314922|gb|AI444722.2|AI444722
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|211500823|gb|FL228132.1|FL228132
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|211500820|gb|FL228129.1|FL228129
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|101401583|gb|EB822467.1|EB822467
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|32915276|gb|CF020088.1|CF020088
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|76280698|gb|DV020266.1|DV020266
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|4681058|gb|AI629728.1|AI629728
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|211500822|gb|FL228131.1|FL228131
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG