1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCTTGCTGCGTCAAGGCCAGAGCCGCCGCGCCGGAGTCCGAGGCCAGGTGCCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTGgtaggcctcgattgtcttgcttggtaacgtagatgatgatacagcagcacaatttattactgtttgacccctgattgttgcctctgcag
species | Zea mays |
transcript | GRMZM2G060896_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTG GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGEST: gi|148991840|gb|EE033431.2|EE033431
genomic: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTGgtaggcctcg ... gcctctgcagGCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG
EST: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTG GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGEST: gi|211227858|gb|FL287068.1|FL287068
genomic: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTGgtaggcctcg ... gcctctgcagGCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG
EST: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTG GCAAAGC-AGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGEST: gi|211229916|gb|FL287072.1|FL287072
genomic: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTGgtaggcctcg ... gcctctgcagGCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG
EST: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTG GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGEST: gi|74240569|gb|DT648483.1|DT648483
genomic: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTGgtaggcctcg ... gcctctgcagGCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG
EST: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTG GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGEST: gi|6918561|gb|AW400091.1|AW400091
genomic: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTGgtaggcctcg ... gcctctgcagGCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG
EST: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTG GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGEST: gi|211227857|gb|FL287067.1|FL287067
genomic: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTGgtaggcctcg ... gcctctgcagGCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG
EST: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTG GCAAAG-CAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGEST: gi|148946476|gb|EC891786.2|EC891786
genomic: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTGgtaggcctcg ... gcctctgcagGCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG
EST: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTG GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG
genomic: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTGgtaggcctcg ... gcctctgcagGCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTGCTGCGTCAAGGCCAGAGCCGCCGCGCCGGAGTCCGAGGCCAGGTGCCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTGgtaggcctcgattgtcttgcttggtaacgtagatgatgatacagcagcacaatttattactgtttgacccctgattgttgcctctgcag
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