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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTCTGACATGGTCTGGAGGAGGAATGGCGCCAATGTTGGTGCGGCTGAGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGACgtgagttctgccaatcaccatgcctgtgttttcgactctaataacagagattaaccaatctaattgggatatag

Basic information

species Zea mays
transcript GRMZM2G060842_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211288681|gb|FL312632.1|FL312632
EST:     AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGAC                         GTGCGGGAAGATCCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
genomic: AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGACgtgagttctg ... tgggatatagGTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
EST: gi|211050404|gb|FL363822.1|FL363822
EST:     AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGAC                         GTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
genomic: AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGACgtgagttctg ... tgggatatagGTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
EST: gi|76280845|gb|DV020413.1|DV020413
EST:     AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGAC                         GTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
genomic: AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGACgtgagttctg ... tgggatatagGTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
EST: gi|37417224|gb|CF646264.1|CF646264
EST:     AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGAC                         GTGCGGGAAGATGCT
genomic: AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGACgtgagttctg ... tgggatatagGTGCGGGAAGATGCT
EST: gi|50327397|gb|CO522523.1|CO522523
EST:     AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGAC                         GTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
genomic: AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGACgtgagttctg ... tgggatatagGTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
EST: gi|211271929|gb|FL194754.1|FL194754
EST:     AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGAC                         GTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
genomic: AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGACgtgagttctg ... tgggatatagGTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
EST: gi|76280844|gb|DV020412.1|DV020412
EST:     GGGAGTGCAATAGATGTTGCTCAGCCTGAAGAC                         GTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
genomic: GGGAGTGCAATAGATGTTGCTCAGCCTGAAGACgtgagttctg ... tgggatatagGTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
EST: gi|91875732|gb|EB405689.1|EB405689
EST:     AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGAC                         GTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
genomic: AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGACgtgagttctg ... tgggatatagGTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
EST: gi|211290817|gb|FL312641.1|FL312641
EST:     AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGAC                         GTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
genomic: AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGACgtgagttctg ... tgggatatagGTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
EST: gi|211305896|gb|FL324269.1|FL324269
EST:     AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGAC                         GTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
genomic: AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGACgtgagttctg ... tgggatatagGTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
EST: gi|76912690|gb|DV164849.1|DV164849
EST:     AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGAC                         GTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
genomic: AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGACgtgagttctg ... tgggatatagGTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
EST: gi|101386086|gb|EB815086.1|EB815086
EST:     AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGAC                         GTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
genomic: AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGACgtgagttctg ... tgggatatagGTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
EST: gi|50323043|gb|CO518169.1|CO518169
EST:     AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGAC                         GTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
genomic: AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGACgtgagttctg ... tgggatatagGTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
EST: gi|211386003|gb|FL329687.1|FL329687
EST:     AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGAC                         GTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGAT-ACT
genomic: AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGACgtgagttctg ... tgggatatagGTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
EST: gi|50326968|gb|CO522094.1|CO522094
EST:     AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGAC                         GTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
genomic: AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGACgtgagttctg ... tgggatatagGTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
EST: gi|211265830|gb|FL364906.1|FL364906
EST:     AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGAC                         GTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT
genomic: AGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGACgtgagttctg ... tgggatatagGTGCGGGAAGATGCTGTGGACGAGGGAATGTTGAGACTAGCGGCGATTACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTCTCTGACATGGTCTGGAGGAGGAATGGCGCCAATGTTGGTGCGGCTGAGGCGACCACGGGCCAAGGGAGTGCAATAGATGTTGCTCAGCCTGAAGACgtgagttctgccaatcaccatgcctgtgttttcgactctaataacagagattaaccaatctaattgggatatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA