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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATATGCCGATGAGGCCGGCGCGGCCGGGCCCGCCGATGCAGCACCGGGGCCCTCCGCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAGgtcagttcttacactccttgcgtcccccttgctcatggtgtcagtcttctaagtaagttctaactcatgagatgccccttgtggcggattgtgctttcac...

Basic information

species Zea mays
transcript GRMZM2G060669_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G060669_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g02960.4 (Oryza sativa), 5'ss of exon 2
CGATATGCCGATGAGGCCGGCGCGGCCGGGCCCGCCGATGCAGCACCGGGGCCCTCCGCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAGgtcagttcttacactccttgcgtcccccttgctcatggtgtcagt----cttctaagtaagttctaactcatgagatgcc--ccttgtggcggattgtgctttcac-----------------------------------------------------------
||| |||||||||||||| | |||||| || |||||||||||| ||||||| ||||| || ||||| |||   |||  ||||||  |||| ||||||||||| ||  ||    |||| |||  ||| |    ||   | |   |     |     | |  || ||| ||   ||   | |  | |||||    | |  | ||   |                                                           
CGAGATGCCGATGAGGCCTGTGCGGCCAGGGCCGCCGATGCAGTACCGGGGGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc---ctccgtgcccccctcccaatcgatgcgctggaacagcagtagattgcgtactaccttgcgattcgacggcattgtgttccagttcgattctgctaggttaaccatgttgattgatttgtttacttactgttcactatcgggttcttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9733680|gb|BE512432.1|BE512432
EST:     GCCCTCCGCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAG                         ACCTGCCCTCTGCTGCTCAGGGTTTTCACAAGG
genomic: GCCCTCCGCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAGgtcagttctt ... gtgtgtgtagACCTGCCCTCTGCTGCTCAGGGTTTTCACAAGG
EST: gi|211247897|gb|FL075408.1|FL075408
EST:     GCCCTCCGCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAG                         ACCTGCCCTCTGCTGCTCAGGGTTTTCACAAGG
genomic: GCCCTCCGCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAGgtcagttctt ... gtgtgtgtagACCTGCCCTCTGCTGCTCAGGGTTTTCACAAGG