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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGCTGCCTCGCGCTGTGGTGgtgagccatccatcgaccctgcctagcagatctcaccgtcaccgtcttctgcgggctttgagtctcgaacccctagccttccgtagatccgaggacactt...

Basic information

species Zea mays
transcript GRMZM2G060564_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211520836|gb|FL034043.1|FL034043
EST:     CCTACTGCTGCCTCGCGCTGTGGTG                         TGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
genomic: CCTACTGCTGCCTCGCGCTGTGGTGgtgagccatc ... ttctgttcagTGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
EST: gi|37416319|gb|CF645810.1|CF645810
EST:     CCTACTGCTGCCTCGCGCTGTGGTG                         TGGACCTTGCGTGTCGCACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
genomic: CCTACTGCTGCCTCGCGCTGTGGTGgtgagccatc ... ttctgttcagTGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
EST: gi|211520841|gb|FL034048.1|FL034048
EST:     CCTACTGCTGCCTCGCGCTGTGGTG                         TGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
genomic: CCTACTGCTGCCTCGCGCTGTGGTGgtgagccatc ... ttctgttcagTGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
EST: gi|211520834|gb|FL034041.1|FL034041
EST:     CCTACTGCTGCCTCGCGCTGTGGTG                         TGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
genomic: CCTACTGCTGCCTCGCGCTGTGGTGgtgagccatc ... ttctgttcagTGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
EST: gi|211520840|gb|FL034047.1|FL034047
EST:     CCTACTGCTGCCTCGCGCTGTGGTG                         TGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
genomic: CCTACTGCTGCCTCGCGCTGTGGTGgtgagccatc ... ttctgttcagTGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
EST: gi|211397639|gb|FL034039.1|FL034039
EST:     CCTACTGCTGCCTCGCGCTGTGGTG                         TGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
genomic: CCTACTGCTGCCTCGCGCTGTGGTGgtgagccatc ... ttctgttcagTGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
EST: gi|211397637|gb|FL034037.1|FL034037
EST:     CCTACTGCTGCCTCGCGCTGTGGTG                         TGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
genomic: CCTACTGCTGCCTCGCGCTGTGGTGgtgagccatc ... ttctgttcagTGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
EST: gi|148930645|gb|EC872835.2|EC872835
EST:     CCTACTGCTGCCTCGCGCTGTGGTG                         TGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
genomic: CCTACTGCTGCCTCGCGCTGTGGTGgtgagccatc ... ttctgttcagTGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
EST: gi|211520833|gb|FL034040.1|FL034040
EST:     CCTACTGCTGCCTCGCGCTGTGGTG                         TGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
genomic: CCTACTGCTGCCTCGCGCTGTGGTGgtgagccatc ... ttctgttcagTGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
EST: gi|211397638|gb|FL034038.1|FL034038
EST:     CCTACTGCTGCCTCGCGCTGTGGTG                         TGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
genomic: CCTACTGCTGCCTCGCGCTGTGGTGgtgagccatc ... ttctgttcagTGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
EST: gi|211520838|gb|FL034045.1|FL034045
EST:     CCTACTGCTGCCTCGCGCTGTGGTG                         TGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
genomic: CCTACTGCTGCCTCGCGCTGTGGTGgtgagccatc ... ttctgttcagTGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
EST: gi|211520842|gb|FL034049.1|FL034049
EST:     CCTACTGCTGCCTCGCGCTGTGGTG                         TGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
genomic: CCTACTGCTGCCTCGCGCTGTGGTGgtgagccatc ... ttctgttcagTGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
EST: gi|78090964|gb|DV519338.1|DV519338
EST:     CCTACTGCTGCCTCGCGCTGTGGTG                         TGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
genomic: CCTACTGCTGCCTCGCGCTGTGGTGgtgagccatc ... ttctgttcagTGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
EST: gi|211520835|gb|FL034042.1|FL034042
EST:     CCTACTGCTGCCTCGCGCTGTGGTG                         TGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
genomic: CCTACTGCTGCCTCGCGCTGTGGTGgtgagccatc ... ttctgttcagTGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
EST: gi|101396680|gb|EB820265.1|EB820265
EST:     CCTACTGCTGCCTCGCGCTGTGGTG                         TGGACCTTGCGTGTCGTACGTGCTTCGCAAAAGGGCTCTCTACAATGACAT
genomic: CCTACTGCTGCCTCGCGCTGTGGTGgtgagccatc ... ttctgttcagTGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
EST: gi|211520837|gb|FL034044.1|FL034044
EST:     CCTACTGCTGCCTCGCGCTGTGGTG                         TGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
genomic: CCTACTGCTGCCTCGCGCTGTGGTGgtgagccatc ... ttctgttcagTGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
EST: gi|76011810|gb|DT938980.1|DT938980
EST:     CCTACTGCTGCCTCGCGCTGTGGTG                         TGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
genomic: CCTACTGCTGCCTCGCGCTGTGGTGgtgagccatc ... ttctgttcagTGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
EST: gi|211520839|gb|FL034046.1|FL034046
EST:     CCTACTGCTGCCTCGCGCTGTGGTG                         TGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT
genomic: CCTACTGCTGCCTCGCGCTGTGGTGgtgagccatc ... ttctgttcagTGGACCTTGCGTGTCGTACATGCTTCGCAAAAGGGCTCTCTACAATGACAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTGCTGCCTCGCGCTGTGGTGgtgagccatccatcgaccctgcctagcagatctcaccgtcaccgtcttctgcgggctttgagtctcgaacccctagccttccgtagatccgaggacactt

- TGCTGC