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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTGGCTCAAACTAACACCGGGAATACACCTAAGAGCTACTCTTTGAATATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatccagattcacagctctacactgcttaaatgaagcatctctatctatgattggaatcaattttactgcccagagacattacttgcctttgttct...

Basic information

species Zea mays
transcript GRMZM2G060284_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G060284_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g43450.1 (Oryza sativa), 5'ss of exon 2
GAATTGGCTCAAACTAACACCGGGAATACACCTAAGAGCTACTCTTTGAATATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatccagattcacagctctacactgcttaaatgaagcat-ctctatctatgattggaat-caattttactgcccagagacattacttgcctttgttct
||  |||||||||||||||| || |||||||| ||||| ||||| |||||||||| ||| ||||| || || |||||||||||||| || ||||||||||||||||  |  |||| |||||    |     ||      || | || | ||| ||     | | | ||  |  |   || ||   ||||| |    |||   
GAGATGGCTCAAACTAACACTGGCAATACACCAAAGAGTTACTCCTTGAATATGTCCAAGGATTTTGTACCAATGTGTGTTTTCTCTGAGTCTAACCAAGgtaggagtccaattcccagcttgttaacttatactgcttgcgttctttttctctgtacatattactatcctgatagacatagtttttactcgttcctgta--

upper sequence: GRMZM2G060284_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA04G03030.2 (Glycine max), 5'ss of exon 2
GAATTGGCTCAAACTAACACCGGGAATACACCTAAGAGCTACTCTTTGAATATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatccagattcacagctctacactgcttaaatgaagcatctctatctatgattggaatcaattttactgccca---gagacattacttgcctttgttct
||  |||||    |  |  | | |||||  || || |  || || ||||||||||| ||||| || |||||||||||||| ||||||||  ||| |||||||  ||  |  | || ||| | ||   |  ||  |       | |  ||| ||     |  ||||  |||    | |   |||  |  || ||  |   | | 
GAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTATTCATTGAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAGgtgagaatcgtactctcaggtttatggtagttgta-attttttgttcatcaatagc-agtttcaaaattatcaactattggagcaaggacatga-tacatcca

upper sequence: GRMZM2G060284_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA06G03070.1 (Glycine max), 5'ss of exon 2
GAATTGGCTCAAACTAACACCGGGAATACACCTAAGAGCTACTCTTTGAATATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatccagattcacagctctacactgcttaaatgaagcatctctatctatgattggaat--caattttactgcccagagacattacttgcctttgttct---
||  ||||    ||  |  | | |||||   | || |  || || ||||| ||||| ||||| ||||||||||||||||| ||||| ||  ||| |||||||  ||  |  | ||  || | |       | |  || |   | ||  |   | || | |||  |||  |||    | |  |  |  |  |  |  | || |   
GAGATGGCAGGCACAGAAGCTGTGAATATGTCCAAAACTTATTCATTGAACATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGgtgagaatcgtaatctaaggtttgtg----tcagttgtaatttttcatttgttaatagcaatttcaaaattatccactattgg-agcaagtatccatattatata

upper sequence: GRMZM2G060284_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv18s0001g13370.t01 (Vitis vinifera), 5'ss of exon 2
GAATTGGCTCAAACTAACACCGGGAATACACCTAAGAGCTACTCTTTGAATATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatccagattcacagctctacactgcttaaa-tgaagcatctctatctatgattggaatca-attttactgcccagagacattacttgcctttgttct
||| || ||   |||    |    ||||  || || || ||||| |||||||||||||||||||| ||||||||||||||||| || ||  | || ||||||| ||  ||   |    | | || |||   |||  | |   || | | |   |||        | | |||| |    | |  | |        |   ||| 
GAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTACTCCTTGAATATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAGgtaagagtcatgatttttgtt-taaactatgtaatcttatatatttgttttagtgaacttttctatagtttattttgtaaattcctgttacaagtccattc-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116816147|gb|EC858853.1|EC858853
EST:     TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAA                         GGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
genomic: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatcca ... ttcgttgcagGGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
EST: gi|28187707|gb|CB179317.1|CB179317
EST:     TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAG                         GGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
genomic: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatcca ... ttcgttgcagGGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
EST: gi|211224212|gb|FK968311.1|FK968311
EST:     TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAG                         GGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
genomic: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatcca ... ttcgttgcagGGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
EST: gi|149085565|gb|EE175077.2|EE175077
EST:     TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAG                         GGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
genomic: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatcca ... ttcgttgcagGGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
EST: gi|13490745|gb|BG517509.1|BG517509
EST:     TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAG                         GGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
genomic: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatcca ... ttcgttgcagGGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
EST: gi|76937460|gb|DV175147.1|DV175147
EST:     TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAG                         GGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
genomic: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatcca ... ttcgttgcagGGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
EST: gi|211224215|gb|FK968314.1|FK968314
EST:     TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAG                         GGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
genomic: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatcca ... ttcgttgcagGGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
EST: gi|211224214|gb|FK968313.1|FK968313
EST:     TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAG                         GGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
genomic: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatcca ... ttcgttgcagGGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC