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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTTTGGTACTGTGCACCGTGCGGATTGGAATGGTTCGgtatgttttctgtcacttagcacaagcatgttttttgcagtttgggttaatggatattctctatatctctgtagacacataaacacaatatttcattatg...

Basic information

species Zea mays
transcript GRMZM2G059671_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G059671_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g32610.3 (Oryza sativa), 5'ss of exon 8
GTTCTTTTGGTACTGTGCACCGTGCGGATTGGAATGGTTCGgtatgttttctgtcacttagcacaagcatgtttt---ttgcagtt-tgggttaatggatattctctatatc-tctgtagacacataaacacaatatttcattatg
| || ||||| || ||||||||||||||||||||||| ||||||||| |  | | | |    |||||||  ||||    ||   || || ||||   | || |   |  ||  |     | |  | |   ||   ||   | ||  
GCTCATTTGGAACCGTGCACCGTGCGGATTGGAATGGCTCGgtatgtctctttttatt----acaagcacattttacagtgtgcttatgtgttacaagttactacttgaatagtgaccggtctaacatgtactgcatacaactac-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32836824|gb|CD976502.1|CD976502
EST:     TACTGTGCACCGTGCGGATTGGAATGGTTCG                         GATGTGGCAGTAAAAATTCTAATGGAGCGGGACTTCCATCCAGAGCGTCTC
genomic: TACTGTGCACCGTGCGGATTGGAATGGTTCGgtatgttttc ... tttaacccagGATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTC
EST: gi|71445939|gb|DR826989.1|DR826989
EST:     GTTCTTTTGGTACTGTGCACCGTGCGGATTGGAATGGTTCG                         GATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTC
genomic: GTTCTTTTGGTACTGTGCACCGTGCGGATTGGAATGGTTCGgtatgttttc ... tttaacccagGATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTC
EST: gi|26456437|gb|CA828020.1|CA828020
EST:     GCGGATTGGAATGGTTCG                         GATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTC
genomic: GCGGATTGGAATGGTTCGgtatgttttc ... tttaacccagGATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTC
EST: gi|32839244|gb|CD978925.1|CD978925
EST:     ACTGTGCACCGTGCGGATTGGAATGGTTCG                         GATGTGGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTC
genomic: ACTGTGCACCGTGCGGATTGGAATGGTTCGgtatgttttc ... tttaacccagGATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTC
EST: gi|32837172|gb|CD976850.1|CD976850
EST:     GGTACTGTGCACCGTGCGGATTGGAATGGTTCG                         GATGTGGCAGTAAAAATTCTAATGGAGCGGGACTTCCATCCAGAGCGTCTC
genomic: GGTACTGTGCACCGTGCGGATTGGAATGGTTCGgtatgttttc ... tttaacccagGATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTC
EST: gi|32838830|gb|CD978511.1|CD978511
EST:     TACTGTGCACCGTGCGGATTGGAATGGTTCG                         GATGTGGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTC
genomic: TACTGTGCACCGTGCGGATTGGAATGGTTCGgtatgttttc ... tttaacccagGATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTC
EST: gi|86471848|gb|DY238218.1|DY238218
EST:     GTTCTTTTGGTACTGTGCCCCGTGCGGATTGGAATGGTTCG                         GATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCCTCCAGAGCGTCTC
genomic: GTTCTTTTGGTACTGTGCACCGTGCGGATTGGAATGGTTCGgtatgttttc ... tttaacccagGATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTC
EST: gi|32836743|gb|CD976421.1|CD976421
EST:     ACTGTGCACCGTGCGGATTGGAATGGTTCG                         GATGTGGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTC
genomic: ACTGTGCACCGTGCGGATTGGAATGGTTCGgtatgttttc ... tttaacccagGATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTC
EST: gi|71445940|gb|DR826990.1|DR826990
EST:     GTTCTTTTGGTACTGTGCACCGTGCGGATTGGAATGGTTCG                         GATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTC
genomic: GTTCTTTTGGTACTGTGCACCGTGCGGATTGGAATGGTTCGgtatgttttc ... tttaacccagGATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTC