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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATGgtatatatactcacacttttccagtttaattattctagacttttcgctgctgatgacctgtctcggtttcctttcag

Basic information

species Zea mays
transcript GRMZM2G059580_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G059580_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g37440.1 (Oryza sativa), 5'ss of exon 4
GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATGgtatatat----actcacacttttccagtttaat-tattctagacttttcgctgctgatgacctgtctcggtttcctttcag-
 |||||||||||||||||||||| ||  ||||||||||||| |||||||| ||||||||||||||  ||    |||   | |||   | |  ||| ||   |   |  |||  | || |  |  |   ||   | |   | |  
ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCGCGCGCTATGgtatgcatgtagacttgtattttcttattcaaatctaccttttccagttccatactaaccaggttaatcatgtcctacttaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31350377|gb|CD434734.1|CD434734
EST:     GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATG                         TTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
genomic: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATGgtatatatac ... ttcctttcagTTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
EST: gi|31356573|gb|CD440930.1|CD440930
EST:     GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATG                         TTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
genomic: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATGgtatatatac ... ttcctttcagTTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
EST: gi|19822159|gb|BQ048183.1|BQ048183
EST:     GGAGACTCCTGATGGCCCTGTGTTTGAGAGTAATGCTATTGCGCGCTATG                         TTGCTCGC-TGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATAGAAC
genomic: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATGgtatatatac ... ttcctttcagTTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
EST: gi|40337134|gb|CK371204.1|CK371204
EST:     TTTTGAGAGTAATGCTATTGCGCGCTATG                         TTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
genomic: TTTTGAGAGTAATGCTATTGCGCGCTATGgtatatatac ... ttcctttcagTTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
EST: gi|31356567|gb|CD440924.1|CD440924
EST:     GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATG                         TTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
genomic: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATGgtatatatac ... ttcctttcagTTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
EST: gi|22935604|gb|BU571879.1|BU571879
EST:     GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATG                         TTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
genomic: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATGgtatatatac ... ttcctttcagTTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
EST: gi|31351288|gb|CD435645.1|CD435645
EST:     GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATG                         TTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
genomic: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATGgtatatatac ... ttcctttcagTTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
EST: gi|26455900|gb|CA827483.1|CA827483
EST:     GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATG                         TTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
genomic: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATGgtatatatac ... ttcctttcagTTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
EST: gi|67012465|gb|CO441214.1|CO441214
EST:     GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATG                         TTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
genomic: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATGgtatatatac ... ttcctttcagTTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC