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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCACCAACATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAGgttcctatgcttactttccactttcgacaatcgtcatcttctttcccctttcaggctttcacctgtaagacaatagcccgcttgttacttttaggcagcc...

Basic information

species Zea mays
transcript GRMZM2G059282_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G059282_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os11g48030.1 (Oryza sativa), 5'ss of exon 2
TCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCACCAACATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAGgttcctatgcttactttccactttcgacaatcgtcatcttctttcccctttcaggctttcacctgtaagacaatagcccgcttgttacttttaggcagcc------------
|||| ||||||||| ||||||||||  | ||||| ||||||  ||||  |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||   |       |||||||| ||   ||   | |||| || |||     |||  |   ||||  |||  | |||  |   |  | ||| ||| ||||              
TCTCCGAGACGCGCGAGGGCGAGGTTAGGTTCCCCGAGATCAGCACCCCCATCCTCGAGAAGATCTGCCAGTACTTCTACTGGTCGCTCCACTACTCCAGgtaaat-------ctttccaccttttccacatgacatcctcattcagtcctcacac---cacccctaatcccata--ctagtcctaactcttatgcagttggatctagtttg

upper sequence: GRMZM2G059282_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT5G59140.1 (Arabidopsis thaliana), 5'ss of exon 2
TCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCACCAACATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAGgttcctatgcttactttccactttcgacaatcgtcatcttctttcccctttcaggctttcacctgtaagacaatagcccgcttgttacttttaggcagcc------
|||| ||  ||    | ||||  ||    ||||| || ||   |||||  || || |||||||| |||||||| ||||| ||||| || || |||||||||||||  |   ||  |  | ||||  ||  || |  ||| | ||   || |    | |     ||||  |   |   | | | |||   || ||     |      
TCTCGGAATCGAAAGATGGCGTAGTGACTTTCCCTGATATAAGCACCACAATACTAGAGAAGATTTGCCAGTACTTCTACTGGTCTCTTCAATACTCCAGgttccattatctaact--cgcttttcacc-tcttgctctacattgatctctagaacatggcattgtagtagtct---ctgttagttttcttcagaatcgcatcgct

upper sequence: GRMZM2G059282_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv06s0004g05560.t01 (Vitis vinifera), 5'ss of exon 2
TCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCACCAACATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAGgttcctatgcttactttccactttcgacaatcgtcatcttctttcccctttcaggctt--tcacctgtaagacaatagcccgcttgttacttttaggcagcc
|  | || | |   || || || |||   ||||| |||||   ||||| ||| || ||||||||||||||||||||||| ||||| || || |   | ||||||  ||  || |  | ||     |  | |    |   ||  |    | |  |  ||  | |  || | ||  | |   ||| | ||  |||   |     
TTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCACCACCATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAGgttctgatttttccaatgcaaaaatgttacttaggaaaatcggttttgtgttggttttagtaatttgcatgaagacaattcgcatttttttttggtggga--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211141709|gb|FL287346.1|FL287346
EST:     ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAG                         TGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
genomic: ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAGgttcctatgc ... ggttgtgtagTGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
EST: gi|13490768|gb|BG517532.1|BG517532
EST:     ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAG                         TGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
genomic: ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAGgttcctatgc ... ggttgtgtagTGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
EST: gi|32937826|gb|CF042645.1|CF042645
EST:     ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAG                         TGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
genomic: ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAGgttcctatgc ... ggttgtgtagTGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
EST: gi|32824382|gb|CD964104.1|CD964104
EST:     GATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAG                         TGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
genomic: GATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAGgttcctatgc ... ggttgtgtagTGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
EST: gi|32938012|gb|CF042831.1|CF042831
EST:     ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAG                         TGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
genomic: ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAGgttcctatgc ... ggttgtgtagTGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
EST: gi|211111068|gb|FL388616.1|FL388616
EST:     ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAG                         TGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
genomic: ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAGgttcctatgc ... ggttgtgtagTGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
EST: gi|211214239|gb|FL370034.1|FL370034
EST:     ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAG                         TGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
genomic: ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAGgttcctatgc ... ggttgtgtagTGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
EST: gi|211163296|gb|FL418729.1|FL418729
EST:     ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAG                         TGGGATAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGC
genomic: ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAGgttcctatgc ... ggttgtgtagTGGGA-AGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGC
EST: gi|9461612|gb|BE453818.1|BE453818
EST:     ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAG                         TGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
genomic: ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAGgttcctatgc ... ggttgtgtagTGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
EST: gi|211140277|gb|FL369583.1|FL369583
EST:     ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAG                         TGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
genomic: ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAGgttcctatgc ... ggttgtgtagTGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
EST: gi|211491482|gb|FL425975.1|FL425975
EST:     ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAG                         TGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
genomic: ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAGgttcctatgc ... ggttgtgtagTGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
EST: gi|7958448|gb|AW862750.1|AW862750
EST:     ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAG                         TGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
genomic: ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAGgttcctatgc ... ggttgtgtagTGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
EST: gi|211431958|gb|FL418483.1|FL418483
EST:     ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAG                         TGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
genomic: ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAGgttcctatgc ... ggttgtgtagTGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
EST: gi|211104586|gb|FL031932.1|FL031932
EST:     ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAG                         TGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
genomic: ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAGgttcctatgc ... ggttgtgtagTGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
EST: gi|211468741|gb|FL385438.1|FL385438
EST:     TCCTCGAGAAGATCTGCCAGTATTTSSTATTGGTCGCTCCATTACTCCAG                         TGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
genomic: TCCTCGAGAAGATCTGCCAGTATTTC-TATTGGTCGCTCCATTACTCCAGgttcctatgc ... ggttgtgtagTGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
EST: gi|45846861|gb|CN070804.1|CN070804
EST:     ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAG                         TGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT
genomic: ATCCTCGAGAAGATCTGCCAGTATTTCTATTGGTCGCTCCATTACTCCAGgttcctatgc ... ggttgtgtagTGGGAAGGAGACAGCGGAGTTTCCAATCGAACCGGAGATAACCCTGGAGCT